Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0170.Seq
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 86 1e-17
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 83 8e-17
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 1.0
06_03_0543 + 21967787-21970261 29 1.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 2.4
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 3.1
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 27 5.5
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045... 27 5.5
01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977 27 5.5
12_02_1057 + 25733376-25735439 27 7.2
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 27 7.2
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943... 27 7.2
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 27 7.2
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 27 7.2
04_03_0663 - 18487295-18487795 27 7.2
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 27 7.2
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 27 7.2
01_06_0867 - 32586254-32586574,32586756-32587172 27 7.2
08_02_0588 + 19036509-19039235 26 9.5
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 26 9.5
05_01_0214 - 1615519-1616775 26 9.5
02_02_0210 + 7873962-7874753 26 9.5
02_02_0209 + 7866348-7867139 26 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 85.8 bits (203), Expect = 1e-17
Identities = 36/65 (55%), Positives = 50/65 (76%)
Frame = +3
Query: 3 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 182
+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E+
Sbjct: 160 YVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEE 219
Query: 183 QAKEQ 197
+A Q
Sbjct: 220 EAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 83.0 bits (196), Expect = 8e-17
Identities = 34/61 (55%), Positives = 47/61 (77%)
Frame = +3
Query: 3 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 182
+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E+
Sbjct: 160 YVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEE 219
Query: 183 Q 185
+
Sbjct: 220 E 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 304 TRCSSCFWSTPCSRRMVCPGTR*VEHN 384
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 304 TRCSSCFWSTPCSRRMVCPGTR 369
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 54 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 143
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 304 TRCSSCFWSTPCSRRMVCPGTR*VEHN 384
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 155 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 39
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 129 VVDLFFYRDPEESEK 173
++D+F+YRDP E EK
Sbjct: 721 MLDVFYYRDPNEMEK 735
>03_02_0766 -
11003746-11003902,11004037-11004281,11004379-11004585,
11004699-11004861,11005105-11005370
Length = 345
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 174 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLH 76
PF F++G+G+ H SA A A T+H
Sbjct: 99 PFIFVRGNGKGRTSINHESASSHNAESAAFTVH 131
>01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977
Length = 445
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 162 LQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ 49
L GHG T +P+AG +H+ + LH+PTT +S+Q
Sbjct: 363 LVGHG--TPSYINPAAG---SHNYSQFLHLPTTPSSHQ 395
>12_02_1057 + 25733376-25735439
Length = 687
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 304 TRCSSCFWSTPCSRRMVCPGTR*VEHN 384
T+C C P VCPG+R + N
Sbjct: 93 TQCQECLAGAPAGIVQVCPGSRTADAN 119
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 64 GCWHVKC*GFVVCFPVTSAGMLWLICSSTVTLKKV 168
GC ++ C GFV+ TS GM+ S + + KV
Sbjct: 359 GCMNMLCPGFVLLSRTTSPGMVLTTGSIPLNMTKV 393
>08_01_0950 -
9428506-9428693,9429223-9429595,9430127-9430572,
9430654-9430785,9431129-9431236,9431428-9431533
Length = 450
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 18 IPCNTKSSHSIGLMWW 65
+P + SS+S+GL WW
Sbjct: 19 VPGDVSSSYSLGLFWW 34
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 10 TLLSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 114
++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 10 TLLSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 114
++++ +PS+ + CG C+ VKC G C PVT
Sbjct: 71 SMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>04_03_0663 - 18487295-18487795
Length = 166
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 374 THLVPGQTILLEQGVLQKQELQRVQQAG 291
T + P QT + +Q QKQ QR+Q+ G
Sbjct: 63 TQIKPNQTKIKQQEENQKQSSQRIQKLG 90
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 144 RTNQPQHPSAGHGEAHHEA-STLHVPTTTTSNQ 49
R NQP +A + HEA L VP+ + NQ
Sbjct: 88 RANQPNSKNANEKQQEHEAQGALQVPSMNSLNQ 120
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 145 KNKSTTTSQRWSRGSTPR 92
+ KSTTT +RW R + PR
Sbjct: 122 RKKSTTTPRRWWRSTIPR 139
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 149 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNVH 6
+E Q+ + AL + T PQHF QP H + + ++ V +D H
Sbjct: 150 LESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLPH 198
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 73 HVKC*GFVVCFPVTSAGMLWLICSSTV 153
HV C GFV C + ++ +CS V
Sbjct: 161 HVLCLGFVECLGCVTVNLVLFVCSVVV 187
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 159 QGHGRRTNQPQHPSAGHGEAHHEASTLH 76
+ HG + H GHG +HH +H
Sbjct: 68 RAHGDHHHGHHHHHHGHGHSHHHGPEVH 95
>05_01_0214 - 1615519-1616775
Length = 418
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 177 HPFHFLQGHGRRTNQPQHPSAGHGEAHHEA 88
H H GHG H G G HH+A
Sbjct: 219 HVHHHEDGHGNSITVNLHHHPGTGHHHHDA 248
>02_02_0210 + 7873962-7874753
Length = 263
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 283 RYRPACCTRCSSCFWSTP--CSRRMVCPG 363
R++PA R W+TP C RR C G
Sbjct: 31 RWQPAAAARRKGTAWNTPLRCWRRWWCSG 59
>02_02_0209 + 7866348-7867139
Length = 263
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 283 RYRPACCTRCSSCFWSTP--CSRRMVCPG 363
R++PA R W+TP C RR C G
Sbjct: 31 RWQPAAAARRKGTAWNTPLRCWRRWWCSG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,504
Number of Sequences: 37544
Number of extensions: 193976
Number of successful extensions: 669
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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