Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0170.Seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)                97   6e-21
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   31   0.26 
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   0.80 
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   1.4  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   1.8  
SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)                    27   4.3  
SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)          26   9.8  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score = 96.7 bits (230), Expect = 6e-21
 Identities = 41/61 (67%), Positives = 51/61 (83%)
 Frame = +3

Query: 6   VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 185
           VD+AIPCN K  HSIGLM+WLLAREVLR+RG + R   W+++ DL+FYRDPEE+EK+EQ 
Sbjct: 157 VDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQA 216

Query: 186 A 188
           A
Sbjct: 217 A 217


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 139  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST 5
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPST 1438


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  HSIGLMWWLLAREVLRLRGVLP 107
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 144 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 25
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 152 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 3
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)
          Length = 195

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 144 RTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ*SGKT 34
           R ++P  P   HG  H++ ST   P    SN+  G T
Sbjct: 155 RVHRPATPGREHGVQHNQISTSCEPEFAQSNETGGLT 191


>SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  NTKSSHSIGLMWWLLAREVLRLRGVLP 107
           +T    ++GL+W LL R VL  +G  P
Sbjct: 388 HTTGEGTMGLLWLLLVRRVLENQGARP 414


>SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)
          Length = 542

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  VLPRDQRWDVVVDLFFYRD 155
           VL R++ WDVVVD  F  D
Sbjct: 182 VLAREKEWDVVVDRLFPPD 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,647
Number of Sequences: 59808
Number of extensions: 219483
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)