Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0170.Seq
(398 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 77 5e-15
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 29 0.93
Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical pr... 28 2.1
AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. 28 2.1
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 2.8
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 28 2.8
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 2.8
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 27 3.7
Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF098995-8|AAC67477.1| 306|Caenorhabditis elegans F-box b prote... 27 6.5
Z66524-2|CAA91421.1| 238|Caenorhabditis elegans Hypothetical pr... 26 8.7
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 77.0 bits (181), Expect = 5e-15
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 5/66 (7%)
Frame = +3
Query: 6 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW-----DVVVDLFFYRDPEESE 170
+DI +PCN K SIGLMWW+LARE+L LRG + R + +++ DL+FYRDP E+E
Sbjct: 157 IDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPDLYFYRDPTETE 216
Query: 171 KDEQQA 188
K+E A
Sbjct: 217 KEETGA 222
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 29.5 bits (63), Expect = 0.93
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 298 CCTRCSSCFWSTPCSRRMVCP 360
CCT CF ST CS VCP
Sbjct: 53 CCTN-EECFMSTECSYSAVCP 72
>Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical
protein F11C3.2 protein.
Length = 598
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 347 LLEQGVLQKQELQRVQQAGRYLQPMKPLAPVFIPVFMDRSNY 222
L +G+L+ + L+ + + G Y Q LA V IPV S Y
Sbjct: 297 LFVRGILRLETLKFIDKLGNYTQKKCILAAVGIPVLHAESQY 338
>AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein.
Length = 598
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 347 LLEQGVLQKQELQRVQQAGRYLQPMKPLAPVFIPVFMDRSNY 222
L +G+L+ + L+ + + G Y Q LA V IPV S Y
Sbjct: 297 LFVRGILRLETLKFIDKLGNYTQKKCILAAVGIPVLHAESQY 338
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 347 LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 252
L+EQ ++ +++L+R A R+LQP + PLA F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 30 TKSSHSIGLMWWLLA 74
T+ H IG+MWWL A
Sbjct: 72 TRVEHKIGIMWWLCA 86
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 347 LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 252
L+EQ ++ +++L+R A R+LQP + PLA F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -1
Query: 371 HLVPGQTILLEQGVLQKQELQRVQQAGRYLQPMKPLAPVFIP 246
HL P Q L G Q+ Q +QQ G +P LAP IP
Sbjct: 169 HLQPQQQTLSRPG---SQQSQHIQQPGSIQRPGSVLAPGSIP 207
>Z68315-6|CAA92671.1| 219|Caenorhabditis elegans Hypothetical
protein F28C6.5 protein.
Length = 219
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 141 TNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ*SGK 37
T +P++P A E + + T+H PT ++++ G+
Sbjct: 128 TKKPENPFADVVETNEQLDTVHWPTAVSTSEIEGE 162
>AF098995-8|AAC67477.1| 306|Caenorhabditis elegans F-box b protein
protein 18 protein.
Length = 306
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 121 QRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIA 14
+ W +GS PR + A+N H + I E + GIA
Sbjct: 225 RNWIKGSNPRLRKLTNASNEHNRVIV-ESVFFQGIA 259
>Z66524-2|CAA91421.1| 238|Caenorhabditis elegans Hypothetical
protein T13H5.5 protein.
Length = 238
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 305 VQQAGRYLQPMKPLAPVFIPVFMDRSNYFWFSWY 204
V++AG LQ + P V P F + N W W+
Sbjct: 194 VERAGVRLQDIHPDPLVHFPTFKNDKNNDWDEWW 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,518
Number of Sequences: 27780
Number of extensions: 158985
Number of successful extensions: 612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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