Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0170.Seq
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...    89   1e-18
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...    86   7e-18
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    62   1e-10
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   2.6  
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    27   4.6  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   4.6  
At2g34790.1 68415.m04272 FAD-binding domain-containing protein s...    26   8.0  
At1g13470.1 68414.m01578 expressed protein                             26   8.0  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 39/66 (59%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
 Frame = +3

Query: 3   FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESE-KDE 179
           FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++ +DE
Sbjct: 160 FVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDE 219

Query: 180 QQAKEQ 197
            +A  Q
Sbjct: 220 DEAGPQ 225


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score = 86.2 bits (204), Expect = 7e-18
 Identities = 36/64 (56%), Positives = 49/64 (76%)
 Frame = +3

Query: 3   FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 182
           FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+VDLFFYR+PEE++++  
Sbjct: 161 FVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGD 220

Query: 183 QAKE 194
           +  E
Sbjct: 221 EEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +3

Query: 3   FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 137
           FVDI IP N K  HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 161 FVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 174 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 52
           P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 131 PDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 9   DIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 125
           ++A+ C TKS   +    +  ++ V  +   +P  +RWD
Sbjct: 56  EVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 47  RVGRLGVAWDSNVHK 3
           R GR+G  WD+NVH+
Sbjct: 107 RSGRIGRCWDANVHR 121


>At2g34790.1 68415.m04272 FAD-binding domain-containing protein
           similar to  SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 532

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 341 EQGVLQKQELQRVQQAGRYLQPMKPLAPVFI 249
           +   L K+EL+   Q  RYL P  P  PVFI
Sbjct: 56  QNATLFKEELESTAQNLRYLTPSNP-KPVFI 85


>At1g13470.1 68414.m01578 expressed protein
          Length = 379

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 27  NTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 125
           NTK     G+ W+ +A + + LR V+    +W+
Sbjct: 280 NTKRVDENGVFWFAVAEKRIGLRSVVMERMKWE 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,627,559
Number of Sequences: 28952
Number of extensions: 149448
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)