Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0169.Seq
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   2.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   2.5  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   5.8  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 201 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 100
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 276 YTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKSY 133
           Y+S+   ++P +  ++ Y+   P  Y C I  N+   +P S  DF ++
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS--YLPPSYMDFYTW 486


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 306 GVIIQA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCS 154
           G+  Q  ++FY +   +N+ ++    +  LP+    R LIQ+  T+ IP S
Sbjct: 160 GIQAQTLSNFYMAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,714
Number of Sequences: 5004
Number of extensions: 31027
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)