Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0169.Seq
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 294 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 151
           Q+   +Y   VKE +     H+ +    P   RC I+LN  WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 265 GQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
           G   YA+ +++   FLT      VFN+T  DL+  L
Sbjct: 200 GAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,988
Number of Sequences: 59808
Number of extensions: 216784
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)