Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0169.Seq
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35350.1 68415.m04334 protein phosphatase 2C family protein /...    27   6.3  
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    27   8.4  
At5g02400.1 68418.m00163 protein phosphatase 2C family protein /...    27   8.4  

>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 783

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 144 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFP 260
           +L+HY+       +VL++D L + + N+E V  A   FP
Sbjct: 683 SLRHYRLTENDQFMVLSSDGLYQYLSNVEVVSLAMEKFP 721


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 386 HNHFRQFFYLGRFKYIGRFLHFV*CF 309
           HNH  ++ Y+  +    RFL F  CF
Sbjct: 23  HNHHHRYKYISNYGVGRRFLFFASCF 48


>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 674

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 144 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAY 254
           +L H+K  S+   ++L++D L E   N E +FE +++
Sbjct: 575 SLCHHKLTSRDKFLILSSDGLYEYFSNQEAIFEVESF 611


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,241,882
Number of Sequences: 28952
Number of extensions: 152518
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)