Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0168.Seq
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 133 2e-32
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 62 5e-11
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 59 3e-10
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 52 4e-08
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 50 2e-07
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.019
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.043
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 31 0.075
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.30
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.30
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.40
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 0.92
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 28 0.92
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 27 1.2
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 3.7
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 4.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 4.9
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 6.5
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 25 6.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 6.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 8.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 8.6
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 133 bits (321), Expect = 2e-32
Identities = 61/89 (68%), Positives = 75/89 (84%)
Frame = +1
Query: 241 LETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 420
L+ E+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVY
Sbjct: 60 LKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVY 119
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
NMS EDPGD++++ +GGL EQIR+LREVI
Sbjct: 120 NMSIEDPGDISFAGVGGLNEQIRELREVI 148
Score = 67.3 bits (157), Expect = 1e-12
Identities = 29/56 (51%), Positives = 45/56 (80%)
Frame = +2
Query: 74 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEV 241
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEV
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEV 59
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 62.1 bits (144), Expect = 5e-11
Identities = 33/89 (37%), Positives = 52/89 (58%)
Frame = +1
Query: 241 LETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 420
++T + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 73 IKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVS 132
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
M E D TY +GGL +QI++++EVI
Sbjct: 133 LMMVEKIPDSTYEMVGGLEKQIKEIKEVI 161
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 59.3 bits (137), Expect = 3e-10
Identities = 28/88 (31%), Positives = 47/88 (53%)
Frame = +1
Query: 244 ETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 423
++A++ +++ ++VV ++ ++ G RV D I LP ++DP V
Sbjct: 108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167
Query: 424 MSHEDPGDVTYSAIGGLXEQIRQLREVI 507
M E+ DVTY +GG EQI +LREV+
Sbjct: 168 MQVEEKPDVTYGDVGGCKEQIERLREVV 195
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 52.4 bits (120), Expect = 4e-08
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = +1
Query: 241 LETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 420
LE + IV +T G YVV LD+ LK VAL + ++ LP E D +
Sbjct: 62 LEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSIS 121
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
+ ++ DV+Y+ +GGL Q +++RE +
Sbjct: 122 MLRPDERPDVSYADVGGLDVQKQEVREAV 150
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 98 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGE 238
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQ 60
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/90 (28%), Positives = 48/90 (53%)
Frame = +1
Query: 238 SLETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLV 417
+LE ++ + +T GP Y V +DK+ L+ G V L ++I+ L + DP++
Sbjct: 118 TLEEIIDDDHAIVSTAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMI 177
Query: 418 YNMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
M + +Y+ IGGL QI++++E +
Sbjct: 178 NVMKLDKAPTESYADIGGLESQIQEIKEAV 207
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.019
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 50 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 214
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.043
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 77 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 202
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 31.5 bits (68), Expect = 0.075
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 439 PGDVTYSAIGGLXEQIRQLREVI 507
P VT+S+IGGL QI Q+R+++
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIV 295
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.30
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 68 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 217
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.5 bits (63), Expect = 0.30
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +2
Query: 47 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 226
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 227 IVGEV 241
GEV
Sbjct: 591 QKGEV 595
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.40
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 56 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 232
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 233 GE 238
E
Sbjct: 463 SE 464
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.9 bits (59), Expect = 0.92
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 59 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 184
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.9 bits (59), Expect = 0.92
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 228 ICPTLCRAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 82
+ PTL R RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 427 SHEDPGDVTYSAIGGLXEQIRQLREVI 507
+ E P D++ S IGGL + I +L E++
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELV 190
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 251 AVSRLLQLFVQHFVGLSGHFHSCHIVWSNLLVGH 150
A + L V GLSG ++ CH WSN + +
Sbjct: 247 AQNNSLDFIVNDHQGLSGDYNLCHF-WSNFEIAN 279
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 59 DMEPLREKAFQDYRKKLMEHKEV 127
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 113 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEV 241
E + +R+ + ++Q+KDL+ D DL+ L+S+ V +
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASL 1658
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 56 SDMEPLREKAFQDYRKKLME-HKEV-ESRLKEGRDQLKDLTKQYDKSENDLKA 208
S ++ + KA ++ RK+ E KE+ +SRL+E + K L K + ++LKA
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 95 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIV 232
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q +
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI 133
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 354 NSCSSFKLVFVKLPTTANNVARAISSFY 271
N C S ++F L A AR SSFY
Sbjct: 1294 NMCQSHHVIFWDLIDVATTFARVDSSFY 1321
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 98 RKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 208
R +L++ + KE D LK +YD+ EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 65 EPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTK 175
E L ++ Q ++ +H E+E + +++LKD TK
Sbjct: 4 EQLHAQSGQLRQRFPSKHSEIEDEVANEKEELKDATK 40
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 400 EVDPLVYNMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
E +P+ +V Y IGG Q+ Q+RE++
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELV 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,622
Number of Sequences: 5004
Number of extensions: 34698
Number of successful extensions: 127
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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