Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0168.Seq
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 139 1e-33
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 138 2e-33
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 62 3e-10
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 61 4e-10
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 60 1e-09
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 60 1e-09
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602... 43 2e-04
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 42 3e-04
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 36 0.025
09_06_0271 + 21959213-21960559 33 0.100
11_01_0322 + 2420573-2420728,2420964-2421074,2421193-2421315,242... 31 0.53
03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962 31 0.70
02_01_0205 - 1379448-1379696,1379827-1379901,1379983-1380056,138... 31 0.70
01_06_0255 - 27918447-27918534,27918615-27918685,27919131-279192... 29 2.8
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 28 3.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 5.0
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 27 6.5
08_01_0038 - 282431-283954 27 8.7
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 27 8.7
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 139 bits (337), Expect = 1e-33
Identities = 64/89 (71%), Positives = 75/89 (84%)
Frame = +1
Query: 241 LETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 420
L E+FIVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VY
Sbjct: 68 LRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPREVDPVVY 127
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
NM HEDPG+V+YSA+GGL +QIR+LRE I
Sbjct: 128 NMLHEDPGNVSYSAVGGLSDQIRELRESI 156
Score = 64.1 bits (149), Expect = 6e-11
Identities = 29/56 (51%), Positives = 42/56 (75%)
Frame = +2
Query: 74 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEV 241
R + +YRKKL+ +E+ESR+ R+ LK+ K + K+E+DLK+LQSVGQI+GEV
Sbjct: 12 RRASVTEYRKKLLNCRELESRVSTVRENLKNAKKDFTKTEDDLKSLQSVGQIIGEV 67
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 138 bits (335), Expect = 2e-33
Identities = 64/89 (71%), Positives = 75/89 (84%)
Frame = +1
Query: 241 LETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 420
L E+FIVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VY
Sbjct: 69 LRPLDSERFIVKASSGPRYVVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPREVDPVVY 128
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
NM HEDPG+V+YSA+GGL +QIR+LRE I
Sbjct: 129 NMLHEDPGNVSYSAVGGLSDQIRELRESI 157
Score = 67.7 bits (158), Expect = 5e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +2
Query: 74 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEV 241
R A DYRKKL+ +E+E+R + RD LK+ K + K+E+DLK+LQSVGQI+GEV
Sbjct: 13 RRAAATDYRKKLLTCRELEARARTARDNLKNAKKDFGKTEDDLKSLQSVGQIIGEV 68
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 61.7 bits (143), Expect = 3e-10
Identities = 36/90 (40%), Positives = 51/90 (56%)
Frame = +1
Query: 238 SLETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLV 417
+LE E+ ++ G +YVV + +D KL TRVAL + + LP +VDPLV
Sbjct: 116 ALEIIGEDNILLVHPEG-KYVVDVDKSIDITKLSPSTRVALRNDSYMLHLILPSKVDPLV 174
Query: 418 YNMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
M E D TY IGGL +QI++++EVI
Sbjct: 175 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVI 204
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 61.3 bits (142), Expect = 4e-10
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +1
Query: 256 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 435
+ K +VK +YVV + +D K+ TRVAL + + LP +VDPLV M E
Sbjct: 99 KSKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMKVE 158
Query: 436 DPGDVTYSAIGGLXEQIRQLREVI 507
D TY IGGL +QI++++EVI
Sbjct: 159 KVPDSTYDMIGGLDQQIKEIKEVI 182
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/84 (33%), Positives = 48/84 (57%)
Frame = +1
Query: 256 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 435
+ K+++ ++VVG ++ ++ G RV +D I LP ++DP V M+ E
Sbjct: 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160
Query: 436 DPGDVTYSAIGGLXEQIRQLREVI 507
+ DVTY+ +GG EQI ++REV+
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVV 184
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/84 (33%), Positives = 48/84 (57%)
Frame = +1
Query: 256 EEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 435
+ K+++ ++VVG ++ ++ G RV +D I LP ++DP V M+ E
Sbjct: 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160
Query: 436 DPGDVTYSAIGGLXEQIRQLREVI 507
+ DVTY+ +GG EQI ++REV+
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVV 184
>02_02_0700 +
13058446-13058790,13059352-13059582,13060083-13060241,
13060483-13060635,13061619-13061702,13061847-13061915,
13062374-13062421,13062487-13062621
Length = 407
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +1
Query: 241 LETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVY 420
+E IV +T G Y V +++ LK VAL + ++ LP E D +
Sbjct: 43 MEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 102
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
+ + +VTY+ IGG Q +++RE +
Sbjct: 103 LLGSSEKPNVTYTDIGGCDIQKQEIREAV 131
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Frame = +1
Query: 244 ETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALD--------------MTTLTI 381
E E IV ++ GP Y VG +DK++L+ G + + L++
Sbjct: 122 EIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKMAVRCQCLYKAAFQVLSV 181
Query: 382 MRHLPREVDPLVYNMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
+ L EVDP+V M E +Y+ IGGL QI++++E +
Sbjct: 182 VGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAV 223
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 35.5 bits (78), Expect = 0.025
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +1
Query: 298 VVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGGLX 477
V+G +RQ D+ + L+++ L EVDP+V M E +Y+ IGGL
Sbjct: 181 VIGSKRQSDQM-----VHIRYLQMVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLD 235
Query: 478 EQIRQLREVI 507
QI++++E +
Sbjct: 236 AQIQEIKEAV 245
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 244 ETAQEEKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVAL 360
E E IV ++ GP Y VG +DK++L+ G + +
Sbjct: 124 EIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILM 162
>09_06_0271 + 21959213-21960559
Length = 448
Score = 33.5 bits (73), Expect = 0.100
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = +1
Query: 244 ETAQEEKFIVKATNG--PRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREV---D 408
E E +V +G + VG LD+ LK VAL+ +L ++ P +V
Sbjct: 114 EVVDEHHAVVTLGDGCERKMCVGVAGSLDRGLLKPSANVALNGRSLALVGVPPSDVAACS 173
Query: 409 PLVYNMSHEDPGDVTYSAIGGLXEQIRQLREVI 507
+ ++ D V Y IGG Q R++RE +
Sbjct: 174 AARFLVADADKPGVAYDDIGGCEAQKREVREAV 206
>11_01_0322 +
2420573-2420728,2420964-2421074,2421193-2421315,
2422523-2422618,2422732-2422803
Length = 185
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 56 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVG 235
SD +PL + F + + H + R E R+Q + + + Y++ E +L+A+ + +G
Sbjct: 16 SDTKPLPDYCFSEASEVWRAHSD---RSDEEREQEQAVLRFYEEKEKELEAIDDCSEALG 72
Query: 236 EV 241
+V
Sbjct: 73 DV 74
>03_05_0187 - 21751374-21752631,21752958-21753399,21753914-21753962
Length = 582
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 377 VRVVMSRATRVPPLSLFLSSCRRQPTT*RGPLVAFTINFSS*AVSRLLQ 231
VR+++ TR+P LS+ QPT + P+ F N S VS LL+
Sbjct: 353 VRIILKLLTRIPCLSMIAQQLNSQPTQGQQPIKDFQNNKS--CVSPLLE 399
>02_01_0205 -
1379448-1379696,1379827-1379901,1379983-1380056,
1380150-1380237,1380327-1380475,1380688-1380847,
1380933-1381088,1381177-1381365,1381481-1381714,
1381785-1382009,1382097-1382177
Length = 559
Score = 30.7 bits (66), Expect = 0.70
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 421 NMSHEDPGDVTYSAIGGLXEQIRQLREV 504
N+ H+D GD++ AI L +I +LRE+
Sbjct: 209 NLHHDDEGDISDDAIARLVSEIGRLREI 236
>01_06_0255 -
27918447-27918534,27918615-27918685,27919131-27919226,
27919335-27919403,27919489-27919629,27919708-27919761,
27920183-27920236,27920343-27920386,27921012-27921117,
27921197-27921258,27921358-27921679
Length = 368
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +2
Query: 32 LFTMPASTSDMEPLREKAFQDYR----KKLME-HKEVESRLKEGRDQLKDLTKQYDKSEN 196
L + D + ++ +YR +KL E HKE+ +R+K + L+++ KQ+D +N
Sbjct: 231 LIAIRVIAKDKKEIKWMGLTNYRYEKIQKLEEVHKELITRIKNKKKLLQEIEKQFDDLQN 290
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 95 YRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 214
Y K +++E+ +K +DQ K+ ++ K DLK L+
Sbjct: 368 YNKHAKRQEDLENNMKSCKDQFKEFERKDVKYREDLKHLK 407
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 59 DMEPLREKAFQDYRKKLM---EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 214
D+E + + + ++KL E K E R+K D L+D K+ +S+N + LQ
Sbjct: 183 DLEEVEARQRRLEKEKLYFENERKAGEDRIKRQEDSLRDWDKKLKESQNRILDLQ 237
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 292 RYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 450
R ++ C+ + K KL+ V + IMRHLPR + + ED G V
Sbjct: 96 RELLACK-SISKRKLRTPVDVEDVRREVAIMRHLPRSASIVSLREACEDDGAV 147
>08_01_0038 - 282431-283954
Length = 507
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 270 NKFFFLSCFKTSPTICPTLCRAFRSFSLLSYCLVKSFSWSRP 145
N F FL F T ICP + A + ++ LV F+W P
Sbjct: 435 NNFNFLP-FGTGRRICPGMNFAIAAIEVMLASLVYRFNWKLP 475
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/39 (25%), Positives = 26/39 (66%)
Frame = +2
Query: 125 VESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEV 241
+E+ L +++ KDLT+Q+++ ++ + +QS+ + + V
Sbjct: 527 IEAELSLLKEKQKDLTEQWEREKSVMTKIQSIKEEIDRV 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,204,062
Number of Sequences: 37544
Number of extensions: 224705
Number of successful extensions: 742
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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