Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0168.Seq
         (508 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   4.5  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   4.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   5.9  
Y17688-1|CAA76813.1|  153|Anopheles gambiae gSG1 protein protein.      23   7.9  
EF426240-1|ABO26483.1|   64|Anopheles gambiae unknown protein.         23   7.9  
AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.     23   7.9  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 KEVESRLKEGRDQLKDLTKQYDK 187
           KE++ R  E R+Q +DL +Q  K
Sbjct: 643 KELQERCAELREQKRDLQEQLSK 665


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 95  YRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK 205
           +  K    K ++  LK    Q+KD     +K ++DLK
Sbjct: 385 FSSKEERDKWIQGELKSLNKQIKDKISHQNKLQDDLK 421


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  QDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 208
           Q  +K L E K      +  RDQ   +  ++D++ + LKA
Sbjct: 309 QQIQKYLCEQKRKIGEFEVERDQAAGILAKHDETYDALKA 348


>Y17688-1|CAA76813.1|  153|Anopheles gambiae gSG1 protein protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 263 FSS*AVSRLLQLFVQHFVGLSGHFHSCHIVWSNLLV 156
           F    V +L++  V   +G +    SC  +WSNLL+
Sbjct: 17  FGEQCVIQLVRGMVTRLLGPNQAALSCDNLWSNLLL 52


>EF426240-1|ABO26483.1|   64|Anopheles gambiae unknown protein.
          Length = 64

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 343 GTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIG 468
           G +VA       ++RHL  E + +     + DP   T + +G
Sbjct: 17  GAQVAGGFMWWWVLRHLFHEYEHITGEFDYPDPSSWTNAELG 58


>AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 263 FSS*AVSRLLQLFVQHFVGLSGHFHSCHIVWSNLLV 156
           F    V +L++  V   +G +    SC  +WSNLL+
Sbjct: 17  FGEQCVIQLVRGMVTRLLGPNQAALSCDNLWSNLLL 52


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,862
Number of Sequences: 2352
Number of extensions: 8169
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)