Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0168.Seq
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.2  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   3.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   5.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 71  LREKAFQDYRKKLMEHKEVESR 136
           +RE+  + YR+ L+EHK+  +R
Sbjct: 139 IREQTEEMYREMLLEHKKRRAR 160


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 217 CWTNSWRSLETA-QEEKFIVKATNGPRYVVGCRR 315
           CWT +  SLE A Q   F+   T   + ++ C R
Sbjct: 241 CWTQTENSLEKAKQVGAFMGCPTRNVKEMIRCLR 274


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 217 CWTNSWRSLETA-QEEKFIVKATNGPRYVVGCRR 315
           CWT +  SLE A Q   F+   T   + ++ C R
Sbjct: 112 CWTQTENSLEKAKQVGAFMGCPTRNVKEMIRCLR 145


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 217 CWTNSWRSLETA-QEEKFIVKATNGPRYVVGCRR 315
           CWT +  SLE A Q   F+   T   + ++ C R
Sbjct: 241 CWTQTENSLEKAKQVGAFMGCPTRNVKEMIRCLR 274


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 303 NNVARAISSFYNKF 262
           NNV + ++ FYN F
Sbjct: 521 NNVPKKLNMFYNNF 534


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 303 NNVARAISSFYNKF 262
           NNV + ++ FYN F
Sbjct: 521 NNVPKKLNMFYNNF 534


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 298 VVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHED 438
           +V C   +DK  +K   +V    T   I R L +E   ++ +  H+D
Sbjct: 431 IVKCTDFVDKAMVKQYVKVKHSATLGYISRVLEKEPYVIILDDEHDD 477


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 81   RPSRITERNSWSIRKSSHDSKKVVTN*KI*PNNMTRVK 194
            +P  +  R++ +   +  D+  VVT  K   +N+T  K
Sbjct: 983  KPPSVVSRSTQTSANNDKDTNAVVTQSKEARDNITATK 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,500
Number of Sequences: 438
Number of extensions: 2425
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)