Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2G5H7 Cluster: Membrane protein, putative; n=1; Novosp...    35   1.4  
UniRef50_Q4EC73 Cluster: TENA/THI-4 family; n=6; Wolbachia|Rep: ...    32   7.6  

>UniRef50_Q2G5H7 Cluster: Membrane protein, putative; n=1;
           Novosphingobium aromaticivorans DSM 12444|Rep: Membrane
           protein, putative - Novosphingobium aromaticivorans
           (strain DSM 12444)
          Length = 946

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +1

Query: 196 LIIHKYQTLIVVAILFFNWSKTWTLASLCGGVSKNTY*YILDIREWHDRFSLSFQCLRPF 375
           L +  Y T++ +AILF  W K+W   +L G +S      +  +  + DR  L  Q    F
Sbjct: 286 LALFGYMTILNLAILFIAWKKSWRSLNLLGFISTFALATVWGLASYADRHYLLCQV---F 342

Query: 376 LFNSAYFYL 402
           L  S   YL
Sbjct: 343 LIISIAIYL 351


>UniRef50_Q4EC73 Cluster: TENA/THI-4 family; n=6; Wolbachia|Rep:
           TENA/THI-4 family - Wolbachia endosymbiont of Drosophila
           ananassae
          Length = 256

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 217 FDIYELLIRHSVNNIVTESIERSTY 143
           F+IY+++IRH VN I T+ ++ + Y
Sbjct: 166 FNIYQIVIRHMVNEITTKGVKNNKY 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,360,249
Number of Sequences: 1657284
Number of extensions: 7911774
Number of successful extensions: 18759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18756
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)