Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   1.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   9.4  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 217 TLIVVAILFFNWSKTWTLASLCGGVSKNTY*YILDIREWHDRFS 348
           T+  +    FN   T  L   C GV   +   +    E+ DRFS
Sbjct: 257 TISYILFALFNTFGTILLIMTCSGVHSESQKLVGVCYEYQDRFS 300


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 326 RMSKMY*YVFLLTPPHREASVHVFD 252
           +M  +Y  V +  PP ++ + H++D
Sbjct: 251 KMDGLYGSVVIRQPPAKDPNSHLYD 275


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 326 RMSKMY*YVFLLTPPHREASVHVFD 252
           +M  +Y  V +  PP ++ + H++D
Sbjct: 251 KMDGLYGSVVIRQPPAKDPNSHLYD 275


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 78  IMSVMIQRNVRMLESGKKIQLI 143
           + S  ++RN+  L+ G+KIQ +
Sbjct: 118 LTSTGLRRNLSSLQIGEKIQAL 139


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 226 VVAILFFNWSKTW 264
           +  I+FFN +K+W
Sbjct: 273 IEGIIFFNLAKSW 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,807
Number of Sequences: 336
Number of extensions: 2165
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)