Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   1.4  
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    26   3.2  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    25   5.6  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   5.6  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 271 RASTFSTN*KKVLPPRLMFDIYELLIRHSVNNIVTESIERST 146
           +AST  T+ + V      FD+Y+ ++ ++V +++ E I R T
Sbjct: 380 KASTALTSGEGVFADGCNFDLYKKIVSNNVESVLVEIIPRLT 421


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 101 KRSNARKWKKNSINISRTLNRLRDDIIYRVTN 196
           ++SNA K K + +  SR   RLR +++ RVT+
Sbjct: 101 RKSNAEK-KDSKLRTSRRRERLRKEMVGRVTS 131


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 68  RVIDYERNDTKKRSNARKWKKNSINISRTLNRLRDDII 181
           +V+D + N++  + N  KW +N     R L +L  D +
Sbjct: 45  QVLDNKENNSVSKFNKEKWAENLTPAQRKLLQLEIDTL 82


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 259 FSTN*KKVLP-PRLMFDIYELLIRHSVNNIVTESIERSTYI 140
           F+T  ++VL  P ++ D Y  L+  S  N+V  ++ER+ Y+
Sbjct: 164 FNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYV 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,273
Number of Sequences: 5004
Number of extensions: 35318
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)