Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240...    30   1.4  
05_02_0156 + 7163756-7163834,7165447-7166225                           27   7.5  
03_02_0731 - 10786122-10787018,10787859-10788449,10788659-107887...    27   9.9  

>01_06_1680 -
           39123536-39123628,39123726-39123821,39123941-39124093,
           39124273-39124382,39124601-39124757,39124867-39124877,
           39125138-39125228,39125401-39125496,39125605-39125724,
           39125914-39125978,39126066-39126168,39126406-39126631,
           39126714-39126790
          Length = 465

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 277 LCGGVSKNTY*YILDIREWHDRFSLSFQCLRPF 375
           +  GV+ N     LDIR +HD  SLSF+C   F
Sbjct: 1   MAAGVTFNWIKTPLDIRRFHDFSSLSFRCRNTF 33


>05_02_0156 + 7163756-7163834,7165447-7166225
          Length = 285

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 233 QYFFLIGRKRGRSPPCAAAS 292
           +YFF I R+RGR  PC  AS
Sbjct: 21  KYFFYISRRRGRQ-PCRVAS 39


>03_02_0731 -
           10786122-10787018,10787859-10788449,10788659-10788740,
           10789914-10790107
          Length = 587

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 250 WSKTWTLASLCG 285
           W  TWTLA+LCG
Sbjct: 271 WCYTWTLAALCG 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,319,275
Number of Sequences: 37544
Number of extensions: 215291
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)