Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  31   0.82 
SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2)                        28   5.8  

>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 528 HNTFPSTPRN*ALTPDIKNXRNKSEAAPTATPVARRCYNLS 406
           H++ PS+PRN +  P      ++ E +P+ +P ARR   L+
Sbjct: 335 HSSAPSSPRNRSTRPRPATAASQRERSPSLSPDARRIERLT 375


>SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2)
          Length = 551

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 395 KYAELKRKGRRH*NEREKRSCHS 327
           K + +KR  RR  N R+K+ CHS
Sbjct: 490 KDSSIKRDARRERNARKKKGCHS 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,178
Number of Sequences: 59808
Number of extensions: 242738
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)