BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0167.Seq (548 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 31 0.82 SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2) 28 5.8 >SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) Length = 776 Score = 30.7 bits (66), Expect = 0.82 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -3 Query: 528 HNTFPSTPRN*ALTPDIKNXRNKSEAAPTATPVARRCYNLS 406 H++ PS+PRN + P ++ E +P+ +P ARR L+ Sbjct: 335 HSSAPSSPRNRSTRPRPATAASQRERSPSLSPDARRIERLT 375 >SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2) Length = 551 Score = 27.9 bits (59), Expect = 5.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -1 Query: 395 KYAELKRKGRRH*NEREKRSCHS 327 K + +KR RR N R+K+ CHS Sbjct: 490 KDSSIKRDARRERNARKKKGCHS 512 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,346,178 Number of Sequences: 59808 Number of extensions: 242738 Number of successful extensions: 564 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 563 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1264269032 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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