Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    30   1.3  
Z75527-7|CAN99673.1|   74|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   5.1  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   5.1  
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF106573-8|ABC48249.1|  309|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  NNSVRRVIDYERNDTKKRSNARKWKKNSINISRTLNRL 166
           N S  R++ YERN   + S   KW  N I   R + ++
Sbjct: 255 NGSDDRIVIYERNGETRNSYVVKWPANQIEDRRIIEKI 292


>Z75527-7|CAN99673.1|   74|Caenorhabditis elegans Hypothetical
           protein C15C8.8 protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 257 KRGRSPPCAAASVKIHTNTFWTFGNGTIVS 346
           K+ R    AAAS K+ T   W FGNGTI S
Sbjct: 21  KKPRRMNAAAASPKLSTCQ-WVFGNGTIAS 49


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -2

Query: 226 RLMFDIYELLIRHSVNNIVTESIERSTYIN*IFFPLSSIRTFLCIITLIIDNASH 62
           RL+     L++R S  N++     + +YIN +FF ++S+ + L I+   +DN  +
Sbjct: 123 RLVLLSRSLILRKSSTNVLLRRSNQLSYINYVFF-IASVGSILLILN--VDNIEY 174


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 193 ELIIHKYQTLIVVAILFFNWSKTWTLASL 279
           ELI   YQT+I   +L FN  +TWT+A +
Sbjct: 622 ELIATMYQTVI---LLLFNKCETWTVAEI 647


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 193 ELIIHKYQTLIVVAILFFNWSKTWTLASL 279
           ELI   YQT+I   +L FN  +TWT+A +
Sbjct: 659 ELIATMYQTVI---LLLFNKCETWTVAEI 684


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
            T23F2.2b protein.
          Length = 1538

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 89   NDTKKRSNARKWKKNSINISRTLNRLRDDI 178
            N  K  ++ ++WK+ S  + R +NR+R ++
Sbjct: 1176 NHNKSENDTQRWKEKSGTLFREVNRIRQNL 1205


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
            T23F2.2a protein.
          Length = 1534

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 89   NDTKKRSNARKWKKNSINISRTLNRLRDDI 178
            N  K  ++ ++WK+ S  + R +NR+R ++
Sbjct: 1176 NHNKSENDTQRWKEKSGTLFREVNRIRQNL 1205


>AF106573-8|ABC48249.1|  309|Caenorhabditis elegans Hypothetical
           protein F52D2.8b protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = +1

Query: 178 YLPSDELIIHKYQTLIVVAILFFNWSKTWTLASLCGGVSKNTY*YILDIREWHD----RF 345
           ++ S+ ++ HK+    V++IL +  ++T     LC   S + +  I+ + +W +    +F
Sbjct: 146 FIHSEMIVFHKFPFDDVISILPYFDAQTLETIELCRFGSLDQFERIIYLDQWRNAKTFKF 205

Query: 346 SLSFQC--LRPFLFNSAYFYL 402
             S+ C  L   LF+   FY+
Sbjct: 206 ENSYFCSKLLVHLFHFQCFYI 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,381
Number of Sequences: 27780
Number of extensions: 193249
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)