Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0167.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45620.1 68415.m05672 nucleotidyltransferase family protein l...    30   1.2  
At3g26220.1 68416.m03271 cytochrome P450 family protein identica...    29   1.5  
At3g48300.1 68416.m05271 cytochrome P450 family protein strong s...    29   2.7  
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr...    29   2.7  
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr...    29   2.7  
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc...    29   2.7  
At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not full...    28   3.6  
At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not full...    28   3.6  
At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...    28   3.6  
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    27   8.3  

>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
           similarity to SP|O13833| Caffeine-induced death protein
           1 {Schizosaccharomyces pombe}; contains Pfam profiles
           PF03828: PAP/25A associated domain, PF01909:
           Nucleotidyltransferase domain
          Length = 764

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
 Frame = -2

Query: 397 KNTRN*KEKDEDIETRGRNDRAIPECPKCISMYFY*RRRTGRRASTFSTN*KKVLPPRLM 218
           K+++  +EK+  ++ RG+  R + +  + + MY   R    R  +TF    K ++P    
Sbjct: 394 KDSKTSREKESRVDNRGQ--RLLGQKARMVKMYMACRNDIHRYDATFIAIYKSLIPAEEE 451

Query: 217 FDIYELLIRHSVNNIVTESIERSTYI-----N*IFFPLSSIRTFLCI 92
            +    L+ H  N +  E      Y+     N   FP S I   L I
Sbjct: 452 LEKQRQLMAHLENLVAKEWPHAKLYLYGSCANSFGFPKSDIDVCLAI 498


>At3g26220.1 68416.m03271 cytochrome P450 family protein identical
           to cytochrome P450 monooxygenase (CYP71B3) GB:D78602
           [Arabidopsis thaliana] (Plant Mol. Biol. 37 (1), 39-52
           (1998))
          Length = 501

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 68  RVIDYERND--TKKRSNARKWKKNSINISRTLNRLRDDIIYRVT 193
           R I  E ND   KK   + K KKN++++S+TL  L   II+R T
Sbjct: 142 RYIREEENDLMVKKLKESAK-KKNTVDLSQTLFYLVGSIIFRAT 184


>At3g48300.1 68416.m05271 cytochrome P450 family protein strong
           similarity to (SP:Q9STL0) [Arabidopsis thaliana];
          Length = 420

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47  LTNNSVRRVIDYERND-TKKRSNARKWKKNSINISRTLNRLRDDIIYRV 190
           L+N  VR   D  + + T      RK     +N+S+ L+ L +D+I RV
Sbjct: 70  LSNKMVRSFQDVRQEEITLMMETIRKSSSKPVNLSKILSSLTNDVICRV 118


>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
           transmembrane domains; similar to DNA double-strand
           break repair rad50 ATPase. (Swiss-Prot:O33600)
           [Sulfolobus acidocaldarius]
          Length = 440

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 321 VQNVLVCIFTDAAAQGGERPRFR 253
           V N   CIF DA   GG+ P+ R
Sbjct: 16  VFNFTTCIFADAGIDGGDEPKLR 38


>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
           transmembrane domains; similar to DNA double-strand
           break repair rad50 ATPase. (Swiss-Prot:O33600)
           [Sulfolobus acidocaldarius]
          Length = 440

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 321 VQNVLVCIFTDAAAQGGERPRFR 253
           V N   CIF DA   GG+ P+ R
Sbjct: 16  VFNFTTCIFADAGIDGGDEPKLR 38


>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
           cyclin-like protein [Arabidopsis thaliana] GI:20302467;
           low similarity to SP|P30278 G2/mitotic-specific cyclin 2
           (B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 578

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 328 EWHDRFSLSFQCLRPFLFNSAYFYL 402
           EW  +  L+F+C  P +FN  +FYL
Sbjct: 474 EWLVQEVLNFKCFTPTIFNFLWFYL 498


>At1g79090.2 68414.m09222 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 333 PFPNVQNVLVCIFTDAAAQGGERPRFRP 250
           PFPN+Q  L  +   +    G RP+FRP
Sbjct: 234 PFPNLQPQLPSMHHGSPQHTGNRPQFRP 261


>At1g79090.1 68414.m09221 expressed protein  11408 (cDNA not
           full-length)
          Length = 793

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 333 PFPNVQNVLVCIFTDAAAQGGERPRFRP 250
           PFPN+Q  L  +   +    G RP+FRP
Sbjct: 234 PFPNLQPQLPSMHHGSPQHTGNRPQFRP 261


>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 266 RSPPCAAASVKIHTNTFWTFGNGTIVSPSRFNVFVLFFLIPRI 394
           +SPPCA  S  I    + T   G  V+P     F L   IPRI
Sbjct: 6   QSPPCATLSASIRKGRWKTLAAGFSVTPLPAVNFSLRRSIPRI 48


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 271 ASLCGGVSKNTY*YILDIREWHDRFSLSFQCLR 369
           + LC G+S NT    L + E H  F L   CL+
Sbjct: 305 SKLCEGISINTVATTLALAEQHHCFQLKAACLK 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,744
Number of Sequences: 28952
Number of extensions: 171315
Number of successful extensions: 388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)