Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0160.Seq
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   4e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 73   5e-14
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           42   1e-04
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              41   3e-04
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.12 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.85 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   4.6  
SB_44563| Best HMM Match : DUF1043 (HMM E-Value=3.5)                   27   4.6  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   4.6  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      26   8.0  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     26   8.0  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 4e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 53  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 199
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +1

Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
           RGITIDIA WK ET KYYVT+IDAPGHRDFIKNMIT
Sbjct: 21  RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMIT 56



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 197 MGKGSFKYAWVLDKLKAER 253
           MGKGSFKYAWVLDKLKAER
Sbjct: 1   MGKGSFKYAWVLDKLKAER 19


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 137 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 253
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 204



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
           +G T+++     +T   + T++DAPGH+ F+ NMI+
Sbjct: 206 KGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMIS 241


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +1

Query: 268 IDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
           +D+   + +T    +T++DAPGH+DFI NMIT
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMIT 32


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 53  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 148
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 68  THINIVVIGHVDSGKSTTTGHLIY 139
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 77   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 175
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 50  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 223
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87


>SB_44563| Best HMM Match : DUF1043 (HMM E-Value=3.5)
          Length = 159

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 326 ASMMVT*YLLVSNFQXAISIVIPRHAQPLVCPI 228
           A  M   YL++S F   ++IVI RH   L  P+
Sbjct: 10  ADKMPNHYLMLSTFSFIVAIVIVRHILALTKPL 42


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 74  INIVVIGHVDSGKSTTTGHLIY 139
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  HINIVVIGHVDSGKSTTTGHLI 136
           H+   VIGH+    ST  GHLI
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLI 190


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKN 354
           RGI++  +          + I+D PGH+DF ++
Sbjct: 63  RGISVATSVLAFNYRDKKINILDTPGHKDFAED 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,341,891
Number of Sequences: 59808
Number of extensions: 193139
Number of successful extensions: 485
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)