Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0160.Seq
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 144 2e-35
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 144 2e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 144 2e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 144 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 8e-34
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 81 2e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 81 2e-16
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 77 4e-15
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 44 3e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 44 3e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 44 3e-05
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 37 0.004
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 37 0.004
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.027
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.061
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.081
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.081
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.11
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 29 0.75
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 0.75
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.3
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 7.0
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 7.0
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 26 9.3
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 26 9.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 26 9.3
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 26 9.3
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 144 bits (348), Expect = 2e-35
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 75.4 bits (177), Expect = 1e-14
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 157 QTYHREVREGGPGNG*RILQICLGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGH 336
+ + +E +E G G+ + + + K RGITIDIA WK ET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 337 RDFIKNMIT 363
RDFIKNMIT
Sbjct: 96 RDFIKNMIT 104
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 144 bits (348), Expect = 2e-35
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 75.4 bits (177), Expect = 1e-14
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 157 QTYHREVREGGPGNG*RILQICLGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGH 336
+ + +E +E G G+ + + + K RGITIDIA WK ET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 337 RDFIKNMIT 363
RDFIKNMIT
Sbjct: 96 RDFIKNMIT 104
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 144 bits (348), Expect = 2e-35
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 75.4 bits (177), Expect = 1e-14
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 157 QTYHREVREGGPGNG*RILQICLGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGH 336
+ + +E +E G G+ + + + K RGITIDIA WK ET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 337 RDFIKNMIT 363
RDFIKNMIT
Sbjct: 96 RDFIKNMIT 104
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 144 bits (348), Expect = 2e-35
Identities = 66/67 (98%), Positives = 66/67 (98%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 75.4 bits (177), Expect = 1e-14
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 157 QTYHREVREGGPGNG*RILQICLGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGH 336
+ + +E +E G G+ + + + K RGITIDIA WK ET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 337 RDFIKNMIT 363
RDFIKNMIT
Sbjct: 96 RDFIKNMIT 104
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 8e-34
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 233 DKLKAER 253
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +2
Query: 62 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 241
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 242 KAER 253
+ ER
Sbjct: 227 EEER 230
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RG+T+DI ETS + ++DAPGH+DFI NMIT
Sbjct: 232 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMIT 267
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 81.0 bits (191), Expect = 2e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +2
Query: 62 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 241
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 242 KAER 253
+ ER
Sbjct: 245 EEER 248
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RG+T+DI ETS + ++DAPGH+DFI NMIT
Sbjct: 250 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMIT 285
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 77.0 bits (181), Expect = 4e-15
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = +2
Query: 56 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 235
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 236 KLKAER 253
ER
Sbjct: 164 TNDEER 169
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +1
Query: 157 QTYHREVREGGPGNG*RILQICLGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGH 336
+ Y RE +E G + L C+ + +G T+++ ET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEE--REKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 337 RDFIKNMI 360
+ F+ NMI
Sbjct: 198 KSFVPNMI 205
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITI+ + ET+K + ID PGH D+IKNMIT
Sbjct: 96 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMIT 131
Score = 36.3 bits (80), Expect = 0.007
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 59 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 229
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 230 LDKLKAER 253
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITI+ + ET+K + ID PGH D+IKNMIT
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMIT 132
Score = 36.3 bits (80), Expect = 0.007
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 59 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 229
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 230 LDKLKAER 253
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITI+ + ET+K + ID PGH D+IKNMIT
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMIT 132
Score = 36.3 bits (80), Expect = 0.007
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 59 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 229
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 230 LDKLKAER 253
L+ A+R
Sbjct: 106 LEYETAKR 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMI 360
RGITI++A E+ + D PGH DFIKNMI
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMI 126
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 65 KTHINIVVIGHVDSGKSTTT 124
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.004
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMI 360
RGITI++A E+ + D PGH DFIKNMI
Sbjct: 92 RGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMI 126
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 65 KTHINIVVIGHVDSGKSTTT 124
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.027
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGI 154
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
RGIT+ A + + + +ID PGH DF
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.061
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGID 157
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
RGITI A + + IID PGH DF
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDF 125
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.081
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 148
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 265 TIDIAXWKXETSKYYVTIIDAPGHRDF 345
T+++ K + + + + +ID+PGH DF
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDF 123
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.081
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 148
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 265 TIDIAXWKXETSKYYVTIIDAPGHRDF 345
T+++ K + + + + +ID+PGH DF
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDF 123
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 193
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
RGIT+ Y + +ID PGH DF
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDF 115
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 35 IRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 139
IRD P K+ + V+G+VD+GKST G L +
Sbjct: 129 IRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 35 IRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 139
IRD P K+ + V+G+VD+GKST G L +
Sbjct: 129 IRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 74 INIVVIGHVDSGKSTTT 124
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 74 INIVVIGHVDSGKSTTT 124
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 155 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 253
+KR ++ EKE + F Y LDK+K ER
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKER 304
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 155 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 253
+KR ++ EKE + F Y LDK+K ER
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKER 239
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 205
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 205
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 205
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 59 KEKTHINIVVIGHVDSGKSTTTGHL-IYKCGG 151
++K + +++IG +SGKST + I CGG
Sbjct: 40 RKKKALKLLIIGPGESGKSTIVKQVRILHCGG 71
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 223 LGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNM 357
L I + +G + + + I + Y + IID PGH +F M
Sbjct: 174 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEM 218
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 223 LGIGQTKG*AWRGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNM 357
L I + +G + + + I + Y + IID PGH +F M
Sbjct: 49 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEM 93
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 25.8 bits (54), Expect = 9.3
Identities = 6/13 (46%), Positives = 7/13 (53%)
Frame = -2
Query: 152 YHHICRSSDQWWW 114
Y H+C WWW
Sbjct: 570 YFHLCAEDYHWWW 582
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,621,382
Number of Sequences: 27780
Number of extensions: 139443
Number of successful extensions: 412
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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