Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0160.Seq
(363 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 128 1e-30
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 75 1e-14
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 68 2e-12
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 44 3e-05
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 43 7e-05
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.075
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.075
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.30
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.30
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 29 0.93
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 0.93
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 28 1.6
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 4.9
At5g13650.2 68418.m01585 elongation factor family protein contai... 27 4.9
At5g13650.1 68418.m01584 elongation factor family protein contai... 27 4.9
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 4.9
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 4.9
At5g46380.1 68418.m05708 hypothetical protein 26 8.6
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ... 26 8.6
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 26 8.6
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 26 8.6
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 26 8.6
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 26 8.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 128 bits (308), Expect = 1e-30
Identities = 60/67 (89%), Positives = 61/67 (91%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 72.5 bits (170), Expect = 8e-14
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITIDIA WK ET+KYY T+IDAPGHRDFIKNMIT
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMIT 104
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (308), Expect = 1e-30
Identities = 60/67 (89%), Positives = 61/67 (91%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 72.5 bits (170), Expect = 8e-14
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITIDIA WK ET+KYY T+IDAPGHRDFIKNMIT
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMIT 104
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (308), Expect = 1e-30
Identities = 60/67 (89%), Positives = 61/67 (91%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 72.5 bits (170), Expect = 8e-14
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITIDIA WK ET+KYY T+IDAPGHRDFIKNMIT
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMIT 104
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (308), Expect = 1e-30
Identities = 60/67 (89%), Positives = 61/67 (91%)
Frame = +2
Query: 53 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 232
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 233 DKLKAER 253
DKLKAER
Sbjct: 61 DKLKAER 67
Score = 72.5 bits (170), Expect = 8e-14
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITIDIA WK ET+KYY T+IDAPGHRDFIKNMIT
Sbjct: 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMIT 104
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 75.4 bits (177), Expect = 1e-14
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +2
Query: 68 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 247
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 248 ER 253
ER
Sbjct: 298 ER 299
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMI 360
RGIT+ +A + +++V ++D+PGH+DF+ NMI
Sbjct: 301 RGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMI 335
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 68.1 bits (159), Expect = 2e-12
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +2
Query: 62 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 241
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 242 KAER 253
+ ER
Sbjct: 158 EEER 161
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
+G T+++ ET TI+DAPGH+ ++ NMI+
Sbjct: 163 KGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMIS 198
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITI A + ET+K + +D PGH D++KNMIT
Sbjct: 114 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 149
Score = 32.7 bits (71), Expect = 0.075
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 59 KEKTHINIVVIGHVDSGKSTTT 124
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 42.7 bits (96), Expect = 7e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
RGITI+ A + ET + +D PGH D++KNMIT
Sbjct: 126 RGITINTATVEYETENRHYAHVDCPGHADYVKNMIT 161
Score = 39.1 bits (87), Expect = 9e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 50 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 184
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.075
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGG 151
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDFIKNMIT 363
R IT+ + + Y + +ID+PGH DF + T
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVST 93
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.075
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 65 KTHINIVVIGHVDSGKSTTTGHLIYKCG 148
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
RGITI A K+ + IID PGH DF
Sbjct: 145 RGITITSAATTTFWDKHRINIIDTPGHVDF 174
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
+GITI A Y V IID PGH DF
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDF 146
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGI 154
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
+GITI A Y V IID PGH DF
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDF 146
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGI 154
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 29.1 bits (62), Expect = 0.93
Identities = 26/73 (35%), Positives = 32/73 (43%)
Frame = +2
Query: 41 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 220
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 221 AWVLDKLKAERGV 259
LDKL+ ERG+
Sbjct: 103 ---LDKLQRERGI 112
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 292 ETSKYYVTIIDAPGHRDF 345
E S Y + +ID PGH DF
Sbjct: 131 EASGYLLNLIDTPGHVDF 148
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCG 148
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 298 SKYYVTIIDAPGHRDF 345
++Y + +ID+PGH DF
Sbjct: 96 NEYLINLIDSPGHVDF 111
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 175
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 230 IPKHI*RILYPFPGPPSRTSRWYVC 156
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
RGITI V IID PGH DF
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDF 159
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 256 RGITIDIAXWKXETSKYYVTIIDAPGHRDF 345
RGITI V IID PGH DF
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDF 158
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 199
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 77 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 199
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At5g46380.1 68418.m05708 hypothetical protein
Length = 607
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = -2
Query: 254 HAQPLVCPIPKHI*RILYPFP-----GPPSRTSRW 165
H +PLV P+P H R YP P GP +R+S +
Sbjct: 486 HLRPLVAPLPLH--RDSYPCPPTLAAGPYTRSSAY 518
>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
Homo sapiens, EMBL:HSU81006
Length = 627
Score = 25.8 bits (54), Expect = 8.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -2
Query: 161 VCQYHHICRSSDQWWW 114
V Y H+C +WWW
Sbjct: 538 VLTYMHLCVEDYKWWW 553
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKST 118
P++ + INI IGHV GKST
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST 54
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKST 118
P++ + INI IGHV GKST
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST 54
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKST 118
P++ + INI IGHV GKST
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST 48
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 47 PKMGKEKTHINIVVIGHVDSGKST 118
P++ + INI IGHV GKST
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,262,917
Number of Sequences: 28952
Number of extensions: 133122
Number of successful extensions: 370
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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