Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0159.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.3  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   1.8  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    27   2.3  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.1  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    26   4.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 104 WRPPNLSFLLMPEPIAFTDI 45
           W+ P +S  L+PEPIA+ DI
Sbjct: 914 WKHPIVSEELLPEPIAYGDI 933


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 186 HGLVSVLGNVIAFYNLQESHHWYWI 112
           H L +   N+I FYN  E+  W W+
Sbjct: 65  HKLCNGHKNIIHFYNTAENPQWRWV 89


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 414 EWISSSLDRCNQPVLRDPSDNP 349
           E + S  DR N+PV+ +PS +P
Sbjct: 88  EMLKSRHDRQNEPVIEEPSSHP 109


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 94  GGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWG 198
           G LH F+PV    LL VI   ++ E  YQ +++ G
Sbjct: 123 GKLHLFDPVKTSELLHVI---NLHEILYQKLVKQG 154


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 261 LAPYSAEALRMYERGDASAED----IDTAMRLGAGY 356
           LA ++  +LR+Y RGD   +D     DTA+ LG  +
Sbjct: 66  LAKHAGWSLRLYSRGDLIIDDHHTAEDTAIALGIAF 101


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 154  DHISEDTYQAMMEWGKSVGKTC 219
            D ISE  Y+ +M+   SV KTC
Sbjct: 997  DEISEYLYRRLMDEESSVKKTC 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,865
Number of Sequences: 5004
Number of extensions: 44888
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)