Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0159.Seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 76 2e-14
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 75 3e-14
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 73 1e-13
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 65 3e-11
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 58 4e-09
03_01_0295 + 2279185-2279368,2279499-2279849,2279960-2280122,228... 30 1.0
02_05_0186 + 26569594-26570271 29 1.8
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 29 2.3
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 5.4
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395... 27 7.2
12_02_1215 + 27070164-27070302,27070308-27071098 27 9.5
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 27 9.5
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/77 (42%), Positives = 51/77 (66%)
Frame = +1
Query: 22 ILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWGK 201
ILA+NTSSIS+ + S R + G+HFFNP P+M+L+E+I+ SE+ + + + +
Sbjct: 120 ILASNTSSISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSE 179
Query: 202 SVGKTCITCKDTPGFVV 252
+GKT I +D PGF+V
Sbjct: 180 RLGKTVICSQDYPGFIV 196
Score = 72.9 bits (171), Expect = 1e-13
Identities = 40/93 (43%), Positives = 53/93 (56%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
RIL P EA G A+ EDIDT M+LG +PMGPL+LAD+ GLD+ S+L V+
Sbjct: 198 RILMPMINEAFWALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCLSVLRVLHNG 257
Query: 435 TGNPVFEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
G+ + P +L V G +K G G+Y Y
Sbjct: 258 LGDSKYSPCPLLVQYVDAGR-LGKKRGQGVYSY 289
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 75.4 bits (177), Expect = 3e-14
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +1
Query: 10 PEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMM 189
P H +LATNTS+I +N IG + KD+ G HFF+P VM LLE++++ H S ++
Sbjct: 420 PSHCVLATNTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLL 479
Query: 190 EWGKSVGKTCITCKDTPGFVV 252
+ GK + KT I + GF V
Sbjct: 480 DVGKKIKKTPIVVGNCTGFAV 500
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTG 392
R+ PY+ AL + G ID A G PMGP LAD G
Sbjct: 502 RMFFPYTQSALLFVDLG-MDVYKIDRACTK-FGMPMGPFRLADLVG 545
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +1
Query: 10 PEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMM 189
P H +LATNTS+I ++ IG +D+ G HFF+P VM LLE+++S+H S ++
Sbjct: 435 PSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHTSPQVVVDLL 494
Query: 190 EWGKSVGKTCITCKDTPGFVV 252
+ GK + KT + + GF V
Sbjct: 495 DVGKKIKKTPVVVGNCTGFAV 515
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTG 392
R+ +PY++ AL + +RG ID G PMGP L D G
Sbjct: 517 RMFSPYTSIALLLVDRG-MDVYKIDQVCT-EFGMPMGPFRLLDLVG 560
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/83 (34%), Positives = 47/83 (56%)
Frame = +1
Query: 4 LAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQA 183
+ P H ILATNTS+I +N +G +D+ G HFF+P +M LLE+++++ S
Sbjct: 413 VCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILD 472
Query: 184 MMEWGKSVGKTCITCKDTPGFVV 252
++ GK + K + + GF V
Sbjct: 473 LITVGKMIKKVPVVVGNCTGFAV 495
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 351 GYPMGPLELADYTGLDLKKSILAVMLKETGNPVFEPIGVLDXLVKRGEXXDRKPGXGIY* 530
G PMGP +L D G + ++ + G + ++D +V+ G + G G Y
Sbjct: 527 GMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDS-NLVDLMVQNGR-QGKSNGKGYYL 584
Query: 531 Y 533
Y
Sbjct: 585 Y 585
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/77 (37%), Positives = 42/77 (54%)
Frame = +1
Query: 22 ILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWGK 201
ILATNTS+I ++ IG +D+ G HFF+P M LLE+I++ S ++ K
Sbjct: 421 ILATNTSTIDLHLIGQKTSCQDRIAGAHFFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAK 480
Query: 202 SVGKTCITCKDTPGFVV 252
+ KT I + GF V
Sbjct: 481 QIRKTPIVVGNCTGFAV 497
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +3
Query: 258 ILAPYSAEALRMYERGDA-SAEDIDTAMRLGAGYPM---GPLELADYTGLDLKKSILAVM 425
+L P EA R+ + G A A D+D A +G G+P G + AD G L
Sbjct: 630 MLFPVVNEACRLLDEGVAMKASDLDVASIMGRGFPSYRGGVMFWADSFGAKYIYDRLKDW 689
Query: 426 LKETGNPVFEPIGVLDXLVKRG 491
K G +FEP L ++G
Sbjct: 690 SKYHGG-IFEPYEYLSTRARQG 710
>03_01_0295 +
2279185-2279368,2279499-2279849,2279960-2280122,
2280141-2280177,2280747-2281367
Length = 451
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 321 DIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKETGNPVFEPIGVLDXLVKRGEXX 500
D+D +LG G P+ L ++YT + +I ++ K T + V PI V ++ R E
Sbjct: 174 DLDKESKLGRGPPVKSLNCSEYTWMVHSMNISSI--KVTESDVGYPISVFGTVLARDEYD 231
Query: 501 DRK 509
R+
Sbjct: 232 FRR 234
>02_05_0186 + 26569594-26570271
Length = 225
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 99 PPFLQSSTSDATPGGYKKRSHFRGHLPGHDGV 194
PP SS+SD GG KKR GH P + GV
Sbjct: 23 PPSTASSSSDGA-GGKKKRPRKDGHHPTYRGV 53
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 321 DIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKETGNPVFEPIGVLDXLVKRGEXX 500
D+D + G G P+ L +DY L+ +I+++ + E + V PI + ++ R +
Sbjct: 371 DLDKESKAGLGPPIHSLTSSDYRHLETSMNIISIKVVE--SDVGYPISIFGTVLARDQYD 428
Query: 501 DRK 509
R+
Sbjct: 429 YRR 431
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 1 DLAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHF 108
DL PE T S+ S+ + G+ +K++ + G HF
Sbjct: 534 DLVPEETSKEWIKSTKSIRSAGNSVKQRIQSSGFHF 569
>03_01_0525 +
3952095-3952217,3953131-3953614,3953695-3953750,
3953942-3954018,3954862-3954958,3955274-3955407,
3955760-3955825,3955954-3956044
Length = 375
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 440 EPGFRTNWGSRXTGEKRGXXGPE 508
E FR NW S +GE+R GP+
Sbjct: 86 EHTFRLNWASFSSGERRPDAGPD 108
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 93 RRPPFLQSSTSDATPGGYKKRSHFRGHLPGHDGVGQVCGQDLH 221
RR PF+++ + A G+++R + G G +VCG H
Sbjct: 165 RRRPFVEAVVTSAARRGWRRRGSWALGSSGCGGGDRVCGHWRH 207
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = -1
Query: 217 KSCPQT---CPTPSWPGKCPRKC 158
KSCPQT P + G CP KC
Sbjct: 550 KSCPQTGGPVQFPGFNGSCPAKC 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,240
Number of Sequences: 37544
Number of extensions: 323953
Number of successful extensions: 735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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