Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0159.Seq
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.037
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 33 0.20
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 30 1.0
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05) 27 9.7
SB_41428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 35.1 bits (77), Expect = 0.037
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 10 PEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSD---HISEDTYQ 180
PEH + A+NTSS+ + G G K+ D F PV + L + + D H++ED +
Sbjct: 276 PEHCVFASNTSSLPITQEGVGPKQLDSL-SKQFGFPVGSVTLADEVGLDVACHVAEDLEK 334
Query: 181 AM 186
A+
Sbjct: 335 AL 336
Score = 31.1 bits (67), Expect = 0.60
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 351 GYPMGPLELADYTGLDLKKSILAVMLKETGNPV-FEPIGVLDXLVKRGEXXDRKPGXGIY 527
G+P+G + LAD GLD+ + + K G + I VL LV G RK G G +
Sbjct: 308 GFPVGSVTLADEVGLDVACHVAEDLEKALGARLGGADINVLKSLVAGGN-LGRKSGKGFF 366
Query: 528 *Y 533
Y
Sbjct: 367 VY 368
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 4 LAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQA 183
L+ ILA++TS I + ++ + + H NP + L+EVI + +
Sbjct: 21 LSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPYYVPLVEVIPAPWTDASVIEQ 80
Query: 184 MMEWGKSVGKTCITC-KDTPGFVV 252
++ K +G++ + K+T GF+V
Sbjct: 81 TIKLMKDIGQSPVLLKKETNGFIV 104
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 238 ECPYK*CKSCPQTCPTPSWPGKCPRKC 158
ECP C CP C S CP KC
Sbjct: 1681 ECPLICCSVCPPNCSAQSCGNFCPPKC 1707
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 238 ECPYK*CKSCPQTCPTPSWPGKCPRKC 158
ECP + ++C CP G+CP C
Sbjct: 1436 ECPSECSETCKPECPVKCCTGECPAGC 1462
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = -1
Query: 238 ECPYK*CK----SCPQTCPTPSWPGKCPRKC 158
+CP K C SCPQ+C +CP +C
Sbjct: 1357 DCPIKCCSNALSSCPQSCSGDHCGAECPTQC 1387
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 241 LECPYK*CKSCPQTCPTPSWPGKCPRKC 158
L C K + CP TC PG CP +C
Sbjct: 1243 LSCCLKDARGCPATCVEDCKPG-CPPEC 1269
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -1
Query: 238 ECPYK*CKS-CPQTCPTPSWPGKCPRKC 158
ECP K C CP C + CP KC
Sbjct: 1448 ECPVKCCTGECPAGCLPSNCKPDCPSKC 1475
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = -1
Query: 235 CPYK*CKS----CPQTCPTPSWPGKCPRKCDRFL*PP 137
CP K C + CP C S +CP KC + PP
Sbjct: 1505 CPIKCCPATAIKCPVGCSEHSCKPECPSKCCMKVLPP 1541
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = -1
Query: 238 ECPYK*CKSCPQTCPTPSWPGKCPRKC 158
+CP K C +CP P C C
Sbjct: 1564 DCPIKCCTKLSSSCPADCSPQNCKSSC 1590
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -1
Query: 217 KSCPQTCPTPSWPGKCPRKC 158
K+CP C S CP +C
Sbjct: 1641 KTCPSWCSVSSCKPDCPARC 1660
Score = 23.4 bits (48), Expect(2) = 1.5
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -1
Query: 250 QRILECPYK*CKSCPQTCP 194
Q ECP K SC CP
Sbjct: 1607 QNSFECPVKCLTSCEPECP 1625
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 217 KSCPQTCPTPSWPGKCPRKCD 155
+SC Q CP SW C KCD
Sbjct: 488 RSCYQPCPGGSWGVNCSSKCD 508
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -1
Query: 217 KSCPQTCPTPSW-PGKCPRKCDR 152
K C QTCP +W G C +C R
Sbjct: 250 KFCQQTCPHNTWGEGYCKEECPR 272
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 279 QHCTELGSFNNESWSVLTSDASLAHRLAPLHHGLVSVLGNVIAFYNLQESHHWYWIE 109
Q+CT + ES ++L + + LAP + G + L V A+Y L+ + WI+
Sbjct: 803 QYCTHEVALGMESGAILDQQIAASSMLAPQYAGTKARLNYVGAWYALKTDNQ-PWIQ 858
>SB_38620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.5 bits (58), Expect = 7.3
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 505 RSXXSPLFTSXSRTPIGSKTGFPVSLSMTARMDFFKSRPV*SASSKGPIG*PAPNLIAVS 326
R+ SP+ GS +G P+S S +AR + P + +G + P P+ A+S
Sbjct: 227 RNSTSPVMNGTGTGSRGSPSGNPLSFSFSARPSSLSNLPT-MVNIRGHMPHPNPS-PALS 284
Query: 325 ISSADA-SPL 299
+SS A SP+
Sbjct: 285 LSSQGARSPV 294
>SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)
Length = 466
Score = 27.1 bits (57), Expect = 9.7
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +3
Query: 249 C*RILAPYSAEALRMYERGD--ASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAV 422
C R A A R G+ SAED+ A+ G P + L D L + KS
Sbjct: 189 CDRKAASIKAHVRRYINEGNDVQSAEDLKDAILSNGGIPGVRVALVDAGHLSVVKSAKLG 248
Query: 423 MLKETGNPVFEPIGV 467
+ N F P G+
Sbjct: 249 GISSLNNFEFTPTGI 263
>SB_41428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 141 GYKKRSHFRGHLPGHDGVGQVCGQD 215
GY + S RGH+ G D +G V G D
Sbjct: 65 GYVRGSDRRGHVRGSDRMGYVRGSD 89
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 241 LECPYK*CKSCPQTCPTPSWPGKCPRKCD 155
++CP +SC QTC + G C +CD
Sbjct: 283 VKCPNNGTESCDQTCQKSA--GDCKMRCD 309
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,296
Number of Sequences: 59808
Number of extensions: 354468
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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