Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0159.Seq
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical pr... 103 8e-23
AF039046-12|AAB94215.1| 299|Caenorhabditis elegans Hydroxy-acyl... 94 5e-20
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 70 1e-12
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 69 2e-12
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 69 2e-12
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 69 2e-12
Z81055-3|CAB02892.2| 434|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical pr... 52 2e-07
AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical... 40 0.001
AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical... 40 0.001
Z72507-5|CAA96627.1| 204|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z22178-1|CAA80153.1| 298|Caenorhabditis elegans Hypothetical
protein F54C8.1 protein.
Length = 298
Score = 105 bits (253), Expect = 2e-23
Identities = 44/78 (56%), Positives = 62/78 (79%)
Frame = +1
Query: 19 TILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWG 198
+IL TNTSS + + G++ K +FGGLHFFNPVPVM+LLEVI+SD S++TY ++++G
Sbjct: 125 SILTTNTSSFLLEDVAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSDETYATLIKFG 184
Query: 199 KSVGKTCITCKDTPGFVV 252
+VGKT + CKD+PGF+V
Sbjct: 185 TAVGKTTVACKDSPGFIV 202
Score = 91.5 bits (217), Expect = 4e-19
Identities = 50/94 (53%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSIL-AVMLK 431
R+L PY EA RMYERGDAS DID AM+LGAG+PMGP ELADY GLD K ++ K
Sbjct: 204 RLLIPYFFEAARMYERGDASMTDIDEAMKLGAGHPMGPFELADYIGLDTVKFVMDGWAAK 263
Query: 432 ETGNPVFEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
+FE ++D LV G+ RK G G Y Y
Sbjct: 264 YPEVQLFEASPLVDKLVAEGK-LGRKTGDGFYSY 296
>Z46240-3|CAA86312.1| 309|Caenorhabditis elegans Hypothetical
protein B0272.3 protein.
Length = 309
Score = 103 bits (247), Expect = 8e-23
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = +1
Query: 19 TILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWG 198
T++ TNTSS+ + IG +K K +FGGLHFFNPVP+M+LLEV++ S+ T+ ++++G
Sbjct: 137 TLITTNTSSLRLADIGLNLKDKSRFGGLHFFNPVPMMKLLEVVRHTETSDATFNQLVDYG 196
Query: 199 KSVGKTCITCKDTPGFVV 252
K+VGKT + CKDTPGF+V
Sbjct: 197 KTVGKTTVACKDTPGFIV 214
Score = 96.3 bits (229), Expect = 1e-20
Identities = 52/94 (55%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
R+L PY EALR+YERGDAS EDID AM+LGAGYPMGP EL+DY GLD K I+ +
Sbjct: 216 RLLVPYMFEALRLYERGDASMEDIDVAMKLGAGYPMGPFELSDYVGLDTCKFIMDGWHAQ 275
Query: 435 TGNPV-FEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
V F P +L+ LV G+ RK G G Y Y
Sbjct: 276 YPEEVAFTPSPLLNSLVDSGK-NGRKSGEGFYKY 308
>AF039046-12|AAB94215.1| 299|Caenorhabditis elegans
Hydroxy-acyl-coa dehydrogenaseprotein 1 protein.
Length = 299
Score = 94.3 bits (224), Expect = 5e-20
Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
R+L PY +++RM ERGDA+ EDIDTAMR G YPMGP+EL DY GLD+ +S L + +E
Sbjct: 207 RLLIPYLMDSIRMLERGDATKEDIDTAMRFGTSYPMGPIELCDYVGLDVLQSTLKI-FRE 265
Query: 435 T--GNPVFEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
T G+ F PI ++D LV G+ RK G Y Y
Sbjct: 266 TIPGDARFAPIPLMDKLVAEGK-LGRKTKQGFYTY 299
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +1
Query: 10 PEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMM 189
P++ +L TNTSS+ ++ + I+ F GLHFFNPVPVM+L+EV+ +D S +T +
Sbjct: 125 PQNCMLITNTSSLKLSQMLPVIQNPALFAGLHFFNPVPVMKLVEVVSTDETSPETTNFLF 184
Query: 190 EWGKSVGKTCITCKDTPGFVV 252
+ K + K + KDTPGF+V
Sbjct: 185 NFCKEIKKLPVAAKDTPGFIV 205
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 16 HTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEW 195
+TI+A+NTS++ + I + R DK G+H+F+PV M+LLE+I D S++T +
Sbjct: 460 NTIIASNTSALPIKDIAAASSRSDKVIGMHYFSPVEKMQLLEIITHDGTSKETLATAAQL 519
Query: 196 GKSVGKTCITCKDTPGFVV 252
G GK + KD PGF V
Sbjct: 520 GLKQGKLVVVVKDCPGFFV 538
Score = 37.1 bits (82), Expect = 0.008
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
R L+P +E +R+ + G +E +D + G+P+G LAD GLD+ + + +
Sbjct: 540 RCLSPMMSEIVRLLQEGVEPSE-LDK-LTTKFGFPVGAATLADEAGLDVAEHVARYLGTA 597
Query: 435 TGNPVF-EPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
G V + +L LV+ G RK GI+ Y
Sbjct: 598 LGPRVHGGSVDLLSELVRAGH-KGRKTSKGIFVY 630
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 16 HTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEW 195
+TI+A+NTS++ + I + R DK G+H+F+PV M+LLE+I D S++T +
Sbjct: 486 NTIIASNTSALPIKDIAAASSRPDKVIGMHYFSPVEKMQLLEIITHDGTSKETLATAAQL 545
Query: 196 GKSVGKTCITCKDTPGFVV 252
G GK + KD PGF V
Sbjct: 546 GLKQGKLVVVVKDCPGFFV 564
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
R L P +AE +R+ + G AE +D + G+P+G LAD GLD+ + + + K
Sbjct: 566 RCLGPMTAEIMRLLQEGVDPAE-LDK-LTTKFGFPVGAATLADEVGLDVAEHVAQFLGKA 623
Query: 435 TGNPV-FEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
G + +L LVK G RK G GI+ Y
Sbjct: 624 LGPRLGGGSADLLSELVKAGH-KGRKTGKGIFVY 656
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 16 HTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEW 195
+TI+A+NTS++ + I + R DK G+H+F+PV M+LLE+I D S++T +
Sbjct: 460 NTIIASNTSALPIKDIAAASSRPDKVIGMHYFSPVEKMQLLEIITHDGTSKETLATAAQL 519
Query: 196 GKSVGKTCITCKDTPGFVV 252
G GK + KD PGF V
Sbjct: 520 GLKQGKLVVVVKDCPGFFV 538
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
R L P +AE +R+ + G AE +D + G+P+G LAD GLD+ + + + K
Sbjct: 540 RCLGPMTAEIMRLLQEGVDPAE-LDK-LTTKFGFPVGAATLADEVGLDVAEHVAQFLGKA 597
Query: 435 TGNPV-FEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
G + +L LVK G RK G GI+ Y
Sbjct: 598 LGPRLGGGSADLLSELVKAGH-KGRKTGKGIFVY 630
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 16 HTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEW 195
+TI+A+NTS++ + I + R DK G+H+F+PV M+LLE+I D S++T +
Sbjct: 486 NTIIASNTSALPIKDIAAASSRPDKVIGMHYFSPVEKMQLLEIITHDGTSKETLATAAQL 545
Query: 196 GKSVGKTCITCKDTPGFVV 252
G GK + KD PGF V
Sbjct: 546 GLKQGKLVVVVKDCPGFFV 564
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 255 RILAPYSAEALRMYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLKE 434
R L P +AE +R+ + G AE +D + G+P+G LAD GLD+ + + + K
Sbjct: 566 RCLGPMTAEIMRLLQEGVDPAE-LDK-LTTKFGFPVGAATLADEVGLDVAEHVAQFLGKA 623
Query: 435 TGNPV-FEPIGVLDXLVKRGEXXDRKPGXGIY*Y 533
G + +L LVK G RK G GI+ Y
Sbjct: 624 LGPRLGGGSADLLSELVKAGH-KGRKTGKGIFVY 656
>Z81055-3|CAB02892.2| 434|Caenorhabditis elegans Hypothetical
protein F01G10.3 protein.
Length = 434
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +1
Query: 22 ILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWGK 201
I TNTSS+ +N I S ++ G+HFFNP V+RL+E+I H S + +
Sbjct: 146 IFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACE 205
Query: 202 SVGKTCITCKDTPGFV 249
S+ K + + FV
Sbjct: 206 SIKKLPVLVGNCKSFV 221
>Z81055-2|CAB02891.2| 437|Caenorhabditis elegans Hypothetical
protein F01G10.2 protein.
Length = 437
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Frame = +1
Query: 22 ILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQAMMEWGK 201
I TNTSS+ +N + S ++ K G+HFFNP ++R++EVI S E +
Sbjct: 149 IFGTNTSSLDLNEMSSVLRDPTKVVGIHFFNPANLIRMVEVIYGSKTSSKAVATAFEACR 208
Query: 202 SVGKTCITCKDTPGFV 249
S+ K + + P FV
Sbjct: 209 SIKKLPVLVGNCPAFV 224
Score = 31.5 bits (68), Expect = 0.40
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 255 RILAPYSAEALR-MYERGDASAEDIDTAMRLGAGYPMGPLELADYTGLDLKKSILAVMLK 431
R+L Y ++ + MYE G + ID + G+ MGPL +AD GLD ++ + K
Sbjct: 227 RLLGVYLNQSQKLMYEYGYLPHQ-IDKIIT-NFGFLMGPLTVADMNGLD----VMEKLKK 280
Query: 432 ETGNPVFEPIGVLDXLVKRGEXXDRKPGXGIY*YN 536
E G P + + V R + RK G Y Y+
Sbjct: 281 ENGWPASD----FEKEVWRQKRYGRKTNKGYYKYD 311
>AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical
protein Y71F9B.9a protein.
Length = 284
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 DLAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQ 180
++A TILA++TS+I + G+ K++ +H NP + L E++ + S+DT
Sbjct: 78 EIADPTTILASSTSTIPASKFTDGLINKERCLIVHPVNPPLFLPLTELVPAPWTSQDTVD 137
Query: 181 AMMEWGKSVGKTCITC-KDTPGFVV 252
E +SV + + K+ GFVV
Sbjct: 138 RAAEIMRSVKQEPVKLKKEVLGFVV 162
>AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical
protein Y71F9B.9b protein.
Length = 281
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 DLAPEHTILATNTSSISVNAIGSGIKRKDKFGGLHFFNPVPVMRLLEVIKSDHISEDTYQ 180
++A TILA++TS+I + G+ K++ +H NP + L E++ + S+DT
Sbjct: 78 EIADPTTILASSTSTIPASKFTDGLINKERCLIVHPVNPPLFLPLTELVPAPWTSQDTVD 137
Query: 181 AMMEWGKSVGKTCITC-KDTPGFVV 252
E +SV + + K+ GFVV
Sbjct: 138 RAAEIMRSVKQEPVKLKKEVLGFVV 162
>Z72507-5|CAA96627.1| 204|Caenorhabditis elegans Hypothetical
protein F17C11.5 protein.
Length = 204
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 184 WPGKCPRKCDRFL*PPGV 131
W GKCP F+ PPGV
Sbjct: 37 WQGKCPPGWKTFIRPPGV 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,302,532
Number of Sequences: 27780
Number of extensions: 260518
Number of successful extensions: 651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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