Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0159.Seq
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   1.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.0  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   8.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 128 ITGTGLKKWRPPNLSFL-LMPEPIAFTD 48
           IT TGL+ WR  N ++  L+P  + F +
Sbjct: 8   ITTTGLENWRVNNSNYTELLPIDMRFNE 35


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 312 SAEDIDTAMRLGAGYPMGP 368
           S +DI+T +R  + YP+ P
Sbjct: 109 SRQDIETIIRRNSRYPLRP 127


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 351 GYPMGPLELADYTGLDLKKSILAV 422
           G  MGP E    T +D   SIL +
Sbjct: 649 GRAMGPSERVHVTNMDQYNSILMI 672


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 333 AMRLGAGYPMGPLELAD 383
           A +LG+G PMG   L D
Sbjct: 3   AFQLGSGTPMGAKYLMD 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,244
Number of Sequences: 438
Number of extensions: 3071
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)