Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0158.Seq
         (458 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   9.6  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    20   9.6  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 248 KQGGVISPRFDVPINDIERWTN 313
           ++G  + P FD P +  E W N
Sbjct: 288 ERGVRVIPEFDAPAHVGEGWQN 309


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 380 SSWSMMPPLVVRTRNQTVVRGAD*SIFQY 294
           S  S +PP   RT+   V +  + SI+Q+
Sbjct: 480 SPMSSLPPYPNRTQITEVTQQTEPSIYQH 508


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 209 VIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDLSFPSLF 93
           V  N  KL   T+ H H   L+ +    PD +   P  F
Sbjct: 91  VTCNGLKLPKSTITHLHIYDLHHNPDIYPDPEKFDPERF 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,174
Number of Sequences: 336
Number of extensions: 1685
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)