Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0158.Seq
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             76   2e-14
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                27   9.9  
SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKH 173
           MVR+NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/27 (77%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
 Frame = +2

Query: 257 GVISPRFDVPINDIERW-TNLLPSRQF 334
           GVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 2   GVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 75  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 200
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 164  DEARLHRRV*NR**SQSWQDCCKSHRQTKQGGVIS 268
            DE  +H+R  +R   Q W D C+S    ++ G+ S
Sbjct: 974  DERDVHKRAESRQSLQCWADECRSQHSHRRLGIAS 1008


>SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 426 KKKA*NFSSKVFXSGFFMVHDATTCCK 346
           +K+  N + +V   G F +H+  TCCK
Sbjct: 117 RKRRQNTALRVQFVGTFRIHNCNTCCK 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,694
Number of Sequences: 59808
Number of extensions: 222640
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)