Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0158.Seq
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   136   7e-33
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine rece...    27   8.7  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  136 bits (329), Expect = 7e-33
 Identities = 65/71 (91%), Positives = 69/71 (97%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 222 IVVNLTGRLNK 254
           IVVNLTGRLNK
Sbjct: 61  IVVNLTGRLNK 71



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 251 QGGVISPRFDVPINDIERWTN-LLPSRQFGS*SLQQVVASWTMKKPEXNTLEEKF*AFFF 427
           +  VISPR ++ +ND+E++TN LLPSRQFG   L         ++     L  K   FFF
Sbjct: 71  KASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 337 FLVLTTSGGIMDHEEARXKH 396
           +L+LTTS GIMDHEEAR KH
Sbjct: 101 YLILTTSAGIMDHEEARRKH 120


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 54   NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 227
            NVL D+++ I+  N  K  KR   I  C+K     L V  + GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 228  VN 233
            +N
Sbjct: 886  LN 887


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 254 LV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 111
           +V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 15  VVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical
           protein F35G12.8 protein.
          Length = 1549

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 171 HGYIGEFEIVDDHRAGKIVVNLTGRLNKVV 260
           HG +G+  ++D    G I  N   RLN ++
Sbjct: 622 HGRLGDLGVIDPKYEGAICTNFGARLNYLI 651


>U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 56 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +3

Query: 36  LAMVRMN-VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHR 212
           L  VR N  +SD+ K I      G     I P    I   +T  +   Y GE  ++ +H 
Sbjct: 206 LRQVRKNQFMSDSTKEIAIKFIYGLFVQSILPVVSYI-PMVTSYLYSQYTGEEVLISEHL 264

Query: 213 AGKIVVNLTGRLNKVVSFHLVLMFPSTIL 299
                 +L G L+  +SF+ V+ F  TIL
Sbjct: 265 TLG-TNSLPGLLDPFISFYFVMPFRQTIL 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,792,258
Number of Sequences: 27780
Number of extensions: 162348
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)