Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0157.Seq
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    33   0.013
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    26   1.5  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    24   5.9  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    24   5.9  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    24   7.8  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    24   7.8  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    24   7.8  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 33.1 bits (72), Expect = 0.013
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -1

Query: 249  YIFITTLGTVFMRAATAGFPGSYAV*IRISVTGTAGR*YISIMTVGTVS-----ISAATA 85
            YI  TT+ T  +   T G+ G+    + +  TGT G   + I T  TV+     I   T 
Sbjct: 787  YIIPTTIVTGTVTTVTTGYTGTETSTVTVIPTGTTGTTTVVIQTPTTVTATETDIVTVTT 846

Query: 84   RCTGSGAV*V*ISVTGTAGG 25
              TG+    V ++ TGT+ G
Sbjct: 847  GYTGTETSTVTVTPTGTSTG 866


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 348 DCWNCIHKXCCRRMFWILRCLSLNQCYWN 262
           DC  C+H  CC+ +  +  C++ N  + N
Sbjct: 198 DCGYCLHVYCCKHLAHV-NCINCNTPWAN 225


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 333 IHKXCCRRMFWILRCLSLNQCYWNCRCRYIFITTLGTVFMRAATAGFPGSY 181
           IH+     +F  L+C   ++CY   R   I++TT   +  ++ T G    Y
Sbjct: 240 IHQAKDHLLFSFLQCP--DECYHQKRLSLIYLTTCLLILGKSPTKGLLEKY 288


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 244 FHHDSWNCLHESCYRRISWIL 182
           F+HD  NC+H S   +I  +L
Sbjct: 263 FYHDDTNCIHLSRLEKIRELL 283


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 50  IQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAVPVTL 163
           I  +   DP  + V  L   V  + + ++ LPA+PV+L
Sbjct: 522 IMNKWTVDPAAKDVKPLPRKVGELEIHVFFLPALPVSL 559


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 220 LHESCYRRISWILRCLNSNQ 161
           L E   R ++WI  C++ NQ
Sbjct: 313 LREQEIRNLTWIAECISQNQ 332


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 220 LHESCYRRISWILRCLNSNQ 161
           + E+ YR I W+ RC+ +++
Sbjct: 164 MEEAMYRSIRWLDRCIQAHK 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.121    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,791
Number of Sequences: 5004
Number of extensions: 18049
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)