Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0157.Seq
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0187 + 32209924-32210634 29 1.0
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 2.3
09_06_0354 - 22490833-22491417 28 2.3
07_01_0310 + 2209084-2209554 27 3.1
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 27 5.3
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 26 7.1
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 26 9.3
05_05_0294 + 23900690-23900812,23900976-23901008 26 9.3
03_06_0408 - 33722741-33722893,33723174-33723350,33723798-337239... 26 9.3
>03_06_0187 + 32209924-32210634
Length = 236
Score = 29.1 bits (62), Expect = 1.0
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 29 PAVPVTLIQTQTAPD-PVHRAVAALMDTVPTVMMEMYHLPAVPVTLIRIQTA*DPGNPAV 205
PAV T+ T P P AV + +PT+ P +P T+ I T PG PAV
Sbjct: 63 PAVGPTIPTIPTVPTIPGVPAVGPTIPAIPTIPGVPAVGPTIP-TIPTIPTI--PGVPAV 119
Query: 206 AALMKTVPRV 235
+ + T+P +
Sbjct: 120 GSTIPTIPTI 129
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 26 PPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAVPVT 160
PP+ P + AP P A AA + P+ LPA P T
Sbjct: 434 PPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPATPQT 478
>09_06_0354 - 22490833-22491417
Length = 194
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 259 TVPVTLIQTQTAQDPEHPAAAA 324
T PV +Q+Q QDP P AAA
Sbjct: 60 TPPVVPLQSQETQDPNEPKAAA 81
>07_01_0310 + 2209084-2209554
Length = 156
Score = 27.5 bits (58), Expect = 3.1
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +2
Query: 26 PPAVPVTLIQTQTAPDPVHRAVAALMDTVPTV-MMEMYHLPAVPVTLIRIQTA*DPGNPA 202
PPAVP + A + A + VPTV + +PAVP + P PA
Sbjct: 22 PPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVPKVAL-------PPMPA 74
Query: 203 VAALMKTVPRVVM 241
V A + TVP V +
Sbjct: 75 VPA-VPTVPAVAL 86
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 20 YHPPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAVPVTLIRIQT 178
Y P VP+T++ T ++P+ HRA ++ Y P TL R+ T
Sbjct: 57 YFPDRVPITIVDTSSSPE--HRAKLIAECQAADAVVLTYACDR-PATLERLST 106
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 26 PPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMY 136
PPA+ V + T P+HR +A L P + Y
Sbjct: 60 PPALDVCTLSFPTKRQPIHRLLARLAPADPDTFLLDY 96
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -1
Query: 300 ILRCLSLNQCYWNCRCRYIFITTLGTVFMRAATAGF 193
++R L C W C Y+FI L + + + F
Sbjct: 738 LVRALKWTLCVWVSLCVYVFILVLAMICWSRSPSAF 773
>05_05_0294 + 23900690-23900812,23900976-23901008
Length = 51
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 283 TQTAQDPEHPAAAALMDTV 339
T T PE PAAAAL+D V
Sbjct: 5 TATRWSPERPAAAALVDGV 23
>03_06_0408 -
33722741-33722893,33723174-33723350,33723798-33723947,
33724085-33724145,33724338-33724558
Length = 253
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 20 YHPPAVPVTLIQTQTAPDPVHR 85
Y P VPVT++ T + P+ + R
Sbjct: 59 YFPARVPVTIVDTSSRPNTLER 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.121 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,998,939
Number of Sequences: 37544
Number of extensions: 134641
Number of successful extensions: 271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -