Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0157.Seq
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     31   0.26 
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_30014| Best HMM Match : OTU (HMM E-Value=4.7e-07)                   28   2.4  
SB_34947| Best HMM Match : Vps52 (HMM E-Value=0.0066)                  27   3.2  
SB_25316| Best HMM Match : HycH (HMM E-Value=9.1)                      27   3.2  
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                27   4.2  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   5.5  
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)                  26   7.3  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)                26   9.7  
SB_41366| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_33344| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.7  

>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -3

Query: 217 HESCYRRISWILRCLNSNQCYWN----CR*MIHFHHDCWNCIHKCCYRPMY 77
           H  CYR   +   C +   CY+     C    H+H+ C+   +  CYR  Y
Sbjct: 13  HNRCYRHHHYCCYC-HHRYCYYRHHHYCWYRHHYHYPCYRHYYHRCYRHHY 62


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 178 CLNSNQCYWNCR*MIHFHHDCWNCIHKCC 92
           C  +N C +NC    H+ +   +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 253 TPTVPVTLIQTQTAQDPEHPAAAALMDTVPT 345
           +PT P +   TQT   P  P+  A   T PT
Sbjct: 40  SPTTPTSTAPTQTTPTPTTPSPTAPTQTTPT 70



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 253 TPTVPVTLIQTQTAQDPEHPAAAALMDTVPT 345
           TPT P     T T   P  P + A   T PT
Sbjct: 25  TPTKPTPTTHTPTKPSPTTPTSTAPTQTTPT 55


>SB_30014| Best HMM Match : OTU (HMM E-Value=4.7e-07)
          Length = 588

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 152 PVTLIRIQTA*DPGNPAVAALMKTVPRVVMKMYRHRQ 262
           P+T I++Q     G   + A    +P++V K Y+ R+
Sbjct: 99  PMTAIKVQRIVHTGTGCIVAKKSELPKIVDKFYKERK 135


>SB_34947| Best HMM Match : Vps52 (HMM E-Value=0.0066)
          Length = 383

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 2   TVVMEVYHPPAVPVTLIQTQTA-PDPVHRAVAALMDTVPTVMMEM 133
           +V M  YHPP VP    QT+ A P  V++ +A+L   V   ++ M
Sbjct: 242 SVFMYTYHPP-VPDPHAQTKRACPRQVNKVLASLQCEVENFILRM 285


>SB_25316| Best HMM Match : HycH (HMM E-Value=9.1)
          Length = 228

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 29  PAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAVPVT 160
           P +P T +Q+ + P P    +      +P+++ E  H P+  VT
Sbjct: 62  PELPSTNVQSSSLPTPSRGPLVLNTLRIPSLVDEQSHTPSTAVT 105


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = -3

Query: 211 SCYRRISWIL-RCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCYWN 35
           +C     W L R  + + C   CR  +    D   C   C +R    I R   +++C   
Sbjct: 127 TCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKST 182

Query: 34  CRWMI 20
           CRW +
Sbjct: 183 CRWQL 187



 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = -3

Query: 211 SCYRRISWIL-RCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSLNQCYWN 35
           +C     W L R  + + C   CR  +    D   C   C +R    + R   ++ C   
Sbjct: 110 TCKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKST 165

Query: 34  CRWMIHFHHD 5
           CRW I+   D
Sbjct: 166 CRWRINRQAD 175


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 237  TTLGTVFMRAATAGFPGSYAV*IRISVTGTAGR*YISIMTVGTVSISAAT 88
            TT+ ++F+R    G  G+  + I ++   T  +  I+  ++GT  I A T
Sbjct: 2102 TTVTSLFLRGGRLGDSGARGIAIGLAQNTTIAQLSIAHSSIGTAGIKAIT 2151


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 38   PVTLIQTQTAPDPVHRAVAALMDTVP 115
            P+T I T TAP P  R+ A +M  +P
Sbjct: 1017 PITAILTPTAPTPRGRSFAPVMWDIP 1042


>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
          Length = 806

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 20  YHPPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAVPVTL 163
           + P + P TL++  T+P+P  RA     D + T   +  +  +  V L
Sbjct: 636 HEPTSTPSTLVERITSPEPPARAYRPQKDRLGTTRADGNNRSSAQVVL 683


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -3

Query: 121 DCWNCIHKCCYRPMYWIRRC-LSLNQC 44
           D W  + KC  RP Y + +C  S N C
Sbjct: 900 DHWAKLGKCASRPSYMMEKCQKSCNAC 926


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 70   RRCLSLNQCYWNCRWMIHFHHDC 2
            RRC+ +N+C  N  W     HDC
Sbjct: 2142 RRCIDINECERNNGWC---EHDC 2161


>SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
          Length = 342

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 38  PVTLIQTQTAPDPVHRAVA-ALMDTVPTVMM 127
           P+T   T TAP P  R+ A A+ DT  TV +
Sbjct: 18  PITATLTPTAPTPRGRSTALAMWDTQETVSL 48


>SB_41366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 38  PVTLIQTQTAPDPVHRAVA-ALMDTVPTVMM 127
           P+T   T TAP P  R+ A A+ DT  TV +
Sbjct: 18  PITATLTPTAPTPRGRSTALAMWDTQETVSL 48


>SB_33344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 220 LHESCYRRISWILRCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRC---LSL- 53
           L   CY  ++ + +C   NQCY +   +  ++ +    +   CY  +    +C   L+L 
Sbjct: 45  LVSQCYLDLALVSQCYLDNQCYLDLALVSEYYLN--PALDNQCYLDLALDNQCYLDLALD 102

Query: 52  NQCY 41
           NQCY
Sbjct: 103 NQCY 106


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 318 CRRMFWILRCLSLNQCYWNCR 256
           CR  F+ILR  S   C W CR
Sbjct: 511 CRAGFYILRKPSDPPCCWECR 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.121    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,769,830
Number of Sequences: 59808
Number of extensions: 154492
Number of successful extensions: 309
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)