Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0157.Seq
         (348 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK172751-1|BAD18737.1|  653|Homo sapiens protein ( Homo sapiens ...    29   3.0  
BC105927-1|AAI05928.1|  591|Homo sapiens PROX2 protein protein.        29   5.3  
BC105720-1|AAI05721.1|  591|Homo sapiens PROX2 protein protein.        29   5.3  
BC111745-1|AAI11746.1|  653|Homo sapiens leucine rich repeat con...    28   7.0  
BC111561-1|AAI11562.1|  653|Homo sapiens leucine rich repeat con...    28   7.0  
AY534244-1|AAT07093.1|  641|Homo sapiens XK-related protein 6 pr...    28   7.0  
AY358307-1|AAQ88674.1|  653|Homo sapiens NAG14 protein.                28   7.0  
AK128541-1|BAC87490.1|  125|Homo sapiens protein ( Homo sapiens ...    28   7.0  
AJ301560-1|CAC82736.1|  287|Homo sapiens hypothetical protein pr...    28   7.0  
AJ297858-1|CAC82651.1|  649|Homo sapiens hypothetical protein pr...    28   7.0  
AF196976-1|AAG28019.2|  653|Homo sapiens brain tumor associated ...    28   7.0  

>AK172751-1|BAD18737.1|  653|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23912 fis, clone CAE04210, highly similar to
           Homo sapiens leucine rich repeat containing 4 (LRRC4).
           ).
          Length = 653

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 136 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQ-CYWNCRWMIH 17
           +H HHD WNC     +   +W R  +  N  C   C   +H
Sbjct: 295 LHLHHDPWNCDCDILWL-AWWFREYIPTNSTCCGRCHAPMH 334


>BC105927-1|AAI05928.1|  591|Homo sapiens PROX2 protein protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +2

Query: 38  PVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAV----PVTLIRIQTA*DPGNPAV 205
           P+ L Q Q  P P   A    +  +P+V ME   L AV    P +L+ IQ   +PG+   
Sbjct: 388 PLVLSQQQ-CPLPFTSAHLESLPLLPSVKMEQRGLHAVMEALPFSLVHIQEGLNPGHLKK 446

Query: 206 AALM 217
           A LM
Sbjct: 447 AKLM 450


>BC105720-1|AAI05721.1|  591|Homo sapiens PROX2 protein protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +2

Query: 38  PVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAV----PVTLIRIQTA*DPGNPAV 205
           P+ L Q Q  P P   A    +  +P+V ME   L AV    P +L+ IQ   +PG+   
Sbjct: 388 PLVLSQQQ-CPLPFTSAHLESLPLLPSVKMEQRGLHAVMEALPFSLVHIQEGLNPGHLKK 446

Query: 206 AALM 217
           A LM
Sbjct: 447 AKLM 450


>BC111745-1|AAI11746.1|  653|Homo sapiens leucine rich repeat
           containing 4 protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 136 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQ-CYWNCRWMIH 17
           +H HH+ WNC     +   +W+R  +  N  C   C   +H
Sbjct: 295 LHLHHNPWNCDCDILWL-AWWLREYIPTNSTCCGRCHAPMH 334


>BC111561-1|AAI11562.1|  653|Homo sapiens leucine rich repeat
           containing 4 protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 136 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQ-CYWNCRWMIH 17
           +H HH+ WNC     +   +W+R  +  N  C   C   +H
Sbjct: 295 LHLHHNPWNCDCDILWL-AWWLREYIPTNSTCCGRCHAPMH 334


>AY534244-1|AAT07093.1|  641|Homo sapiens XK-related protein 6
           protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 187 ILRCLNSNQCYWNCR 143
           I  C N++ CYW CR
Sbjct: 56  ICHCCNTSSCYWGCR 70


>AY358307-1|AAQ88674.1|  653|Homo sapiens NAG14 protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 136 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQ-CYWNCRWMIH 17
           +H HH+ WNC     +   +W+R  +  N  C   C   +H
Sbjct: 295 LHLHHNPWNCDCDILWL-AWWLREYIPTNSTCCGRCHAPMH 334


>AK128541-1|BAC87490.1|  125|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46700 fis, clone TRACH3013900. ).
          Length = 125

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 205 YRRISWILRCLNSNQCYWNCR*MIHFHH--DCWNCIHKCCY 89
           YRR+SW    +     Y+     +H H+  DC+ CIH  C+
Sbjct: 58  YRRVSWSFLKI----FYYTLTSRVHVHNVQDCYICIHVPCW 94


>AJ301560-1|CAC82736.1|  287|Homo sapiens hypothetical protein
           protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 187 ILRCLNSNQCYWNCR 143
           I  C N++ CYW CR
Sbjct: 56  ICHCCNTSSCYWGCR 70


>AJ297858-1|CAC82651.1|  649|Homo sapiens hypothetical protein
           protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 136 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQ-CYWNCRWMIH 17
           +H HH+ WNC     +   +W+R  +  N  C   C   +H
Sbjct: 291 LHLHHNPWNCDCDILWL-AWWLREYIPTNSTCCGRCHAPMH 330


>AF196976-1|AAG28019.2|  653|Homo sapiens brain tumor associated
           protein LRRC4 protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 136 IHFHHDCWNCIHKCCYRPMYWIRRCLSLNQ-CYWNCRWMIH 17
           +H HH+ WNC     +   +W+R  +  N  C   C   +H
Sbjct: 295 LHLHHNPWNCDCDILWL-AWWLREYIPTNSTCCGRCHAPMH 334


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.310    0.121    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,318,252
Number of Sequences: 237096
Number of extensions: 702373
Number of successful extensions: 1440
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)