Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0157.Seq
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    26   6.4  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    26   8.5  
X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.        26   8.5  

>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 130 FHHDCWNCIHKCCYRPMYWIRRCLSLNQCYWNCRWMIHFH 11
           F   CW C   CC+ P + +R C  +     NCR MI  H
Sbjct: 104 FLFGCW-C---CCFLP-FCLRSCKDIIHTCPNCRAMIGVH 138


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
           protein F40F11.2b protein.
          Length = 1607

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 5   VVMEVYHPPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHL 142
           +V +V   PA P T   T+  P P  +  A   DTV TV+ ++  L
Sbjct: 194 IVPQVQQQPAKPKT---TKKRPPPKKKTAAQAPDTVGTVLTKVNKL 236


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
           protein F40F11.2a protein.
          Length = 1593

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 5   VVMEVYHPPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHL 142
           +V +V   PA P T   T+  P P  +  A   DTV TV+ ++  L
Sbjct: 180 IVPQVQQQPAKPKT---TKKRPPPKKKTAAQAPDTVGTVLTKVNKL 222


>U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical
           protein R12B2.8 protein.
          Length = 80

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 109 CIHKCCYRPMYWI 71
           C ++CCYR  YW+
Sbjct: 45  CDNECCYRLRYWV 57


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 160 CYWNCR*MIHFHHDCWNC 107
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 23  HPPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLP 145
           H   +P     T T P  V    ++LM+T    ++E  H+P
Sbjct: 397 HGETLPTLNPPTTTTPSIVDHVFSSLMNTQQQKLVEFVHVP 437


>X95608-1|CAA64866.1|  312|Caenorhabditis elegans mec-8 protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 59  QTAPDPVHRAVAALMDTVPTVMMEMYH 139
           Q+ P P HRA++A    VP  +  M H
Sbjct: 122 QSPPPPQHRALSAAAAGVPQFLAPMQH 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.121    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,762,881
Number of Sequences: 27780
Number of extensions: 114717
Number of successful extensions: 284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)