Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0157.Seq
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    28   0.027
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    28   0.027
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.78 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   3.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 0.027
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 118 CWNCIHKCCYRPMYWIRRCLS-LNQCYW 38
           C NCIH   +  ++W+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62



 Score = 26.2 bits (55), Expect = 0.11
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 345 CWNCIHKXCCRRMFWILRCLS-LNQCYW 265
           C NCIH      +FW+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 28.3 bits (60), Expect = 0.027
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 118 CWNCIHKCCYRPMYWIRRCLS-LNQCYW 38
           C NCIH   +  ++W+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510



 Score = 26.2 bits (55), Expect = 0.11
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 345 CWNCIHKXCCRRMFWILRCLS-LNQCYW 265
           C NCIH      +FW+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 288 LSLNQCYWNCRCRYI 244
           LSL    W+CRC+++
Sbjct: 919 LSLGSNPWSCRCKFL 933


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 321 CCRRMFWILRCLSLNQCY 268
           CCR  +   R ++L+ CY
Sbjct: 93  CCRESYLKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 321 CCRRMFWILRCLSLNQCY 268
           CCR  +   R ++L+ CY
Sbjct: 93  CCRESYLKERHITLHHCY 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 250  STPTVPVTLIQTQTAQDPEHPAAAALM 330
            S+P+ PV  ++TQ  Q P  P AA  +
Sbjct: 1483 SSPSSPVLSVRTQ-GQAPGIPPAATFL 1508


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 250  STPTVPVTLIQTQTAQDPEHPAAAALM 330
            S+P+ PV  ++TQ  Q P  P AA  +
Sbjct: 1479 SSPSSPVLSVRTQ-GQAPGIPPAATFL 1504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.121    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,132
Number of Sequences: 438
Number of extensions: 1361
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)