Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0157.Seq
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77000.1 68414.m08967 F-box family protein similar to GP|2155... 29 1.1
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote... 28 1.5
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 28 1.5
At3g19850.1 68416.m02514 phototropic-responsive NPH3 family prot... 27 3.4
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 26 6.0
At4g30240.1 68417.m04300 expressed protein predicted protein, Ar... 26 6.0
At1g50280.1 68414.m05637 phototropic-responsive NPH3 family prot... 26 6.0
At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containi... 26 7.9
At1g21410.1 68414.m02679 F-box family protein similar to SKP1 i... 26 7.9
>At1g77000.1 68414.m08967 F-box family protein similar to
GP|21554029| F-box protein AtFBL5 from [Arabidopsis
thaliana]; similar to F-box protein FBL2 GI:6063090 from
[Homo sapiens]
Length = 360
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/77 (23%), Positives = 30/77 (38%)
Frame = -3
Query: 238 HDSWNCLHESCYRRISWILRCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCL 59
H+ W + + + LR LN +QC + + D + +H C R + CL
Sbjct: 278 HEMWRAVKKGKFDEEG--LRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCL 335
Query: 58 SLNQCYWNCRWMIHFHH 8
+L + C H H
Sbjct: 336 NLQSVHCACILQAHRTH 352
>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
low similarity to SP|Q02104 Lipase 1 precursor (EC
3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
acetyltransferase component of acetoin cleaving system
(EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
eutrophus}; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 417
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 223 CLHESCYRRISWILR-CLNSNQCYWNCR*MI-HFHHDCWNCIH 101
C H + W+++ C+ + +W + + H HH W+ +H
Sbjct: 296 CKHHKIWE---WLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 133 HFHHDCWNCIHKCCYRPMYW 74
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 247 HFHHDSWNCLHESCYRRISW 188
HFHH S +C H CY W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At3g19850.1 68416.m02514 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 554
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 318 CRRMFWILRCLS 283
CR+MFW+LR LS
Sbjct: 283 CRKMFWVLRVLS 294
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 20 YHPPAVPVTLIQTQTAPDPVHRAVAALMDTVPTVMMEMYHLPAV 151
Y PP +P T I+ T PV + P V LP V
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPV 102
>At4g30240.1 68417.m04300 expressed protein predicted protein,
Arabidopsis thaliana
Length = 300
Score = 26.2 bits (55), Expect = 6.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 88 RPMYWIRRCLSLNQCY 41
+PM+W++RC NQ +
Sbjct: 248 KPMFWLQRCRDYNQLF 263
>At1g50280.1 68414.m05637 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 525
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 318 CRRMFWILRCLS 283
CR++FWILR LS
Sbjct: 283 CRKLFWILRVLS 294
>At4g30825.1 68417.m04371 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 904
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 136 IHFHHDCWNCIHKCCYRPM 80
IH++ + +NC+ CC R +
Sbjct: 660 IHWNQEMYNCVINCCARAL 678
>At1g21410.1 68414.m02679 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = -3
Query: 232 SWNCLHESCYRRISWILRCLNSNQCYWNCR*MIHFHHDCWNCIHKCCYRPMYWIRRCLSL 53
SW + + Y LR LN +QC + D + +H C R + CL+L
Sbjct: 280 SWKSVKKGKYDEEG--LRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNL 337
Query: 52 NQCYWNCRWMIHFHHD 5
+ C H H+
Sbjct: 338 TTVHCACILQAHRAHN 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.121 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,302,680
Number of Sequences: 28952
Number of extensions: 97970
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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