Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0156.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    75   5e-15
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    73   2e-14
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   4.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   4.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   4.3  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   4.3  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    25   5.7  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   5.7  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   7.6  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    24   10.0 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   10.0 

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 74.5 bits (175), Expect = 5e-15
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = -1

Query: 252 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           IVN VHKHRE RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 151 IVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 26/31 (83%), Positives = 30/31 (96%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 255
           YWV QD++YK+FEVILVDPSHKAIRRDP+IN
Sbjct: 119 YWVNQDATYKFFEVILVDPSHKAIRRDPRIN 149


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 34/54 (62%), Positives = 40/54 (74%)
 Frame = -1

Query: 252 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           IVN VHKHRE RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 151 IVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 26/31 (83%), Positives = 30/31 (96%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 255
           YWV QD++YK+FEVILVDPSHKAIRRDP+IN
Sbjct: 119 YWVNQDATYKFFEVILVDPSHKAIRRDPRIN 149


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 58  HLLIFVCRWKASGLIKYYC 2
           ++++F+C W   G ++ YC
Sbjct: 649 NIILFLCLWVQGGRVRAYC 667


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 378 SLRWSPCVELLLGCTRFF 325
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 390 ACXPSLRWSPCVELLLGCT 334
           +C PS R  P +ELLL C+
Sbjct: 595 SCGPSYRLLPKIELLLPCS 613


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 213 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 115
           ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  NPLAFHLHTKISKWKVTDSFR*MF 89
           N L FH+H K +K+ + ++ R ++
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLY 102


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 146 AHAGQLGSDATLFNYVAN 93
           A AG +  DAT F YV N
Sbjct: 240 ARAGMIAPDATTFEYVKN 257


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 158 KQREAHAGQLGSDATLFNYVANDKHLSKTVSD 63
           KQ E     +G +   F+   ND+HL +  +D
Sbjct: 263 KQPEEEVSVVGDELKSFDKENNDEHLERVTND 294


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 86  HLSKTVSDFPFAYFCMQMESQWVNKI 9
           HL      FP+ YFC+ +    ++++
Sbjct: 178 HLFYVFQSFPWTYFCLAVSGTCISEL 203


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 298  WTRHTRPFVAILRSTDRE 245
            W  HTRPF  IL  + R+
Sbjct: 2135 WVNHTRPFREILLKSYRQ 2152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,443
Number of Sequences: 5004
Number of extensions: 25781
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)