Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0156.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 64 5e-11
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 64 5e-11
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.25
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 31 0.44
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 30 0.59
01_01_0652 + 4975091-4975585 29 1.0
01_01_0284 - 2357085-2357244,2357354-2357730,2359114-2359371 29 1.4
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 3.1
06_01_1010 + 7866158-7866661 28 3.1
10_08_0857 + 21104688-21104833,21105046-21105274 27 5.5
09_02_0227 - 6029995-6030277,6030456-6030502 27 5.5
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 27 5.5
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 27 7.2
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137... 27 7.2
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 27 7.2
11_06_0707 + 26467214-26470309 26 9.5
07_03_0439 + 18212584-18213065,18214164-18215010 26 9.5
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 26 9.5
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 26 9.5
01_06_0699 - 31313967-31315106 26 9.5
01_01_1100 + 8716853-8716860,8717739-8717844,8717931-8718015,871... 26 9.5
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 63.7 bits (148), Expect = 5e-11
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Frame = -1
Query: 291 VTQGHSSRS*DQRI---VNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWL 124
V HS+ D RI VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W
Sbjct: 240 VDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWK 298
Query: 123 RRNTLQLRRKR 91
R T+ LRR R
Sbjct: 299 RNQTVSLRRYR 309
Score = 56.0 bits (129), Expect = 1e-08
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -2
Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 255
YWV +DS+YKYFE+ILVD +H AIR DP+IN
Sbjct: 224 YWVNEDSTYKYFEIILVDVAHSAIRNDPRIN 254
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 63.7 bits (148), Expect = 5e-11
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Frame = -1
Query: 291 VTQGHSSRS*DQRI---VNAVHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWL 124
V HS+ D RI VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W
Sbjct: 135 VDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWK 193
Query: 123 RRNTLQLRRKR 91
R T+ LRR R
Sbjct: 194 RNQTVSLRRYR 204
Score = 56.0 bits (129), Expect = 1e-08
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -2
Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 255
YWV +DS+YKYFE+ILVD +H AIR DP+IN
Sbjct: 119 YWVNEDSTYKYFEIILVDVAHSAIRNDPRIN 149
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 314 FEVILVDPSHKAIRRDPK 261
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 30.7 bits (66), Expect = 0.44
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +1
Query: 31 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 210
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 211 QTTHL 225
+ T +
Sbjct: 2018 ELTEV 2022
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 219 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 97
+ L GR + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 207 SAGRSSRGLGKGHRYSQTKGGSRRAAW 127
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>01_01_0284 - 2357085-2357244,2357354-2357730,2359114-2359371
Length = 264
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 261 DQRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRR 118
D+ + A HK+ EMRG+T + H Y K WLRR
Sbjct: 215 DENLQRAFHKYLEMRGITPMATNFL-----HEYMINKDSREYLIWLRR 257
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 216 GLTSAGRSSRGLGKGHRYSQTKGGSRRAA 130
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 228 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRR 136
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>10_08_0857 + 21104688-21104833,21105046-21105274
Length = 124
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 207 SAGRSSRGLGKGHRYSQTKGGSRRAAWL 124
++GRS G G G R +G SR AW+
Sbjct: 9 ASGRSIGGAGPGRRPHLRRGESREFAWI 36
>09_02_0227 - 6029995-6030277,6030456-6030502
Length = 109
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -1
Query: 228 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLR 121
R G+ GRS GLG R GGS A W R
Sbjct: 39 RWRHGVAVLGRSGVGLGVALRQRGAGGGSATAVWGR 74
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 206 RLVAAPEVSARDIDTLKQREAHAGQLGSDATLFNYV 99
+ + +PE+S R + T +QRE G+ + L NY+
Sbjct: 195 KTIKSPEISQRSLHTRRQREIKCGEA---SALLNYL 227
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 26.6 bits (56), Expect = 7.2
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -2
Query: 296 DPSHKA--IRRDPKINGS*MLYISIARCVV*LRLVAAPEVSARDIDTLKQREAHAGQLGS 123
D HKA ++ + K S LY A + + P S ID KQ +A
Sbjct: 1294 DLKHKANRLKEEGKEQESTRLYFESALKYLHVASTLEPPPS---IDGFKQCDAAQNLYSD 1350
Query: 122 DATLFNYVANDKHLSKTVSDFPFAYFCMQM 33
A L N+V + SK ++ AY C+++
Sbjct: 1351 TAKLCNFVGHAYEKSKKMAAAALAYKCVEV 1380
>04_03_0361 +
14912420-14912720,14912945-14913117,14913474-14913779,
14913862-14913936,14913976-14914191,14914741-14915527,
14915587-14915681
Length = 650
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 207 SAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNT 112
S GR RG G+G R T+ + RA+W NT
Sbjct: 141 SQGRG-RGRGRGARCRLTEDFNDRASWTNENT 171
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 210 TSAGRSSRGLGKGHRYSQTKGGS 142
+S GRSS G G G+R S GG+
Sbjct: 241 SSNGRSSHGSGGGYRSSYRSGGA 263
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 134 QLGSDAT-LFNYVANDKHLSKTVSDFPFAYFCMQME 30
QLG AT L D KTV D PF C+ +E
Sbjct: 924 QLGQQATNLKKLFIRDTRYLKTVEDLPFLSGCLLVE 959
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -1
Query: 237 HKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSR 139
H HR M G A RSS GL G R +KG R
Sbjct: 147 HHHRWMTGWRGARRSSSGL-PGARPQWSKGALR 178
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWL 124
VH+ RG ++AG R G S G SRR AWL
Sbjct: 273 VHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRR-AWL 310
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 309 GYPRGPVTQGHSSRS*DQRI-VNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGG 145
G PR G + DQ+ N+ R+ R +G RG G+G ++Q +GG
Sbjct: 146 GIPRFTSENGERKNTTDQKARFNSGRDCRDSRQFGPSG--GRGRGRGRSFNQGRGG 199
>01_06_0699 - 31313967-31315106
Length = 379
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -1
Query: 219 RGLTSAGRSSRGLGKGHR-YSQTKG--GSRRAAW 127
R +TSAGR + G GH S T G G RA W
Sbjct: 76 RAVTSAGRVNEARGGGHALLSPTVGSIGGARAIW 109
>01_01_1100 +
8716853-8716860,8717739-8717844,8717931-8718015,
8718632-8718715,8718969-8719073,8719621-8719898
Length = 221
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 288 TQGHSSRS*DQRIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGG 145
+QG S++S Q+ HKH + R S+ S GK SQ +GG
Sbjct: 148 SQG-SAQSLGQQSAEPAHKHNQKRKDESSLGHSNVSGKSAEGSQVRGG 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,737
Number of Sequences: 37544
Number of extensions: 187028
Number of successful extensions: 607
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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