Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0156.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   1e-13
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 29   1.4  
SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_56703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_25868| Best HMM Match : zf-GRF (HMM E-Value=5.1e-21)                27   7.4  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   9.8  
SB_3288| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_11800| Best HMM Match : Ion_trans_2 (HMM E-Value=6.3e-14)           26   9.8  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 32/54 (59%), Positives = 38/54 (70%)
 Frame = -1

Query: 252 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           I    HKHRE+RGLT+AG  +RG+ KGH Y++  G SRRA W R NTL LRR R
Sbjct: 151 ICKPTHKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204



 Score = 59.7 bits (138), Expect = 9e-10
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 255
           YWV QDS YKYFEVI+VDP HKAIRRD +IN
Sbjct: 119 YWVGQDSIYKYFEVIMVDPFHKAIRRDARIN 149


>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 308
           D GS DQ ++DH S D       S+D   A NG + +V  D+
Sbjct: 533 DHGSIDQMQADHVSIDQVQADHGSIDQVQADNGSIDQVQADH 574



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 308
           D GS DQ ++DH S D       S+D   A +G + +V  DN
Sbjct: 523 DHGSIDQVQADHGSIDQMQADHVSIDQVQADHGSIDQVQADN 564



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 308
           D GS DQ ++DH S D       S+D   A +G + +V  D+
Sbjct: 483 DHGSIDQVQADHGSIDQVQADHGSIDQMQADHGSIDQVQADH 524



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 183 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDNLEI 317
           D GS DQ ++DH S D       S+D   A +G + ++  D++ I
Sbjct: 503 DHGSIDQMQADHGSIDQVQADHGSIDQVQADHGSIDQMQADHVSI 547



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 183 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 308
           D GS DQ ++DH S D       S+D   A +G + +V  D+
Sbjct: 493 DHGSIDQVQADHGSIDQMQADHGSIDQVQADHGSIDQVQADH 534


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 240 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 151
           +H  + ++GLT A  S   LG GH YS+ K
Sbjct: 61  MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90


>SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 150 PLFESIYVPCRDLGSCDQPKS---DHASRDAYVQH 245
           PLF  +YVPC      D P S    + +R A+++H
Sbjct: 698 PLFMDVYVPCTCTAHMDHPFSWMFMYRARTAHMEH 732


>SB_56703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 171 HRYSQTKGGSRRAAWLRRNTLQLRRKR*TSI*NCQ*LSICL 49
           HRY +T   S    +L  ++L++RRKR   +  CQ    C+
Sbjct: 51  HRYDRTASVSEMLNYLGWSSLEIRRKRARLLMACQQSRRCI 91


>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 209  LRLVAAPEVSARDIDTLKQREAHAGQLGSDATLFNYVANDK-HL 81
            L  + APE+S   I +  Q+ A    +G+ A    Y+A+ K HL
Sbjct: 1171 LESMRAPELSDYYIPSKTQKNAELAYIGAGALAIGYIASPKLHL 1214


>SB_25868| Best HMM Match : zf-GRF (HMM E-Value=5.1e-21)
          Length = 614

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 255 RIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAA 130
           R+V    + +++RG T   + SRG  +G   S   G S+ +A
Sbjct: 319 RVVQNNRQMQQVRGNTRGSQPSRGQSRGRSQSSQFGASQTSA 360


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 180 RDLGSCDQPKSDHASRDAYVQ 242
           +D  S D+P S+H++RD+Y Q
Sbjct: 68  KDRPSEDEPTSEHSARDSYRQ 88


>SB_3288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 209 LRLVAAPEVSARDIDTLKQREAHAGQLGSDATLFNYVAN 93
           L  + APE+S   I +  Q+ A    +G+DA    Y A+
Sbjct: 311 LESMRAPELSDYYIPSKTQKNAELAYIGADALAIGYTAS 349


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 284 CVTGPRG*PRNTCMKNLVQPSKSSTH 361
           CVTGP G  ++ C+K L    +   H
Sbjct: 737 CVTGPSGCGKSECIKTLAAAHREMGH 762


>SB_11800| Best HMM Match : Ion_trans_2 (HMM E-Value=6.3e-14)
          Length = 479

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 211 QTTHLAMLMYSIHDPLILGSRRMALCDGSTRITSKYLY 324
           Q TH       IH  ++ G++ + L +GST+ +S+Y +
Sbjct: 70  QCTHTCKNPPKIHWTILGGNKTVELVNGSTKNSSEYAF 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,790,450
Number of Sequences: 59808
Number of extensions: 215976
Number of successful extensions: 551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)