Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0156.Seq
         (399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    90   2e-20
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   4.1  
CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein...    23   5.4  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    22   7.2  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    22   9.5  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       22   9.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    22   9.5  

>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = -1

Query: 252 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 91
           I NAVHKHRE+RGLTSAG+SSRGLGK +RYSQT GGSRRAA +RRN L LRR R
Sbjct: 151 ICNAVHKHRELRGLTSAGKSSRGLGKAYRYSQTIGGSRRAAGVRRNRLHLRRYR 204



 Score = 56.8 bits (131), Expect = 3e-10
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = -2

Query: 347 YWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 255
           YWVAQD+++KYFEVI+VDP + AIRRDP +N
Sbjct: 119 YWVAQDAAHKYFEVIMVDPPNNAIRRDPNVN 149


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 189 RGLGKGHRYSQTKGGSRR 136
           +G+G GH Y   + G RR
Sbjct: 320 KGVGSGHLYYYEENGDRR 337


>CR954257-15|CAJ14166.1|  271|Anopheles gambiae predicted protein
           protein.
          Length = 271

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 325 HTSISRLSSWTRHTRPFVA 269
           HT  + L  W R  +PFVA
Sbjct: 201 HTKTALLYLWGRFVQPFVA 219


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 168  RYSQTKGGSRRAAWLRRNTLQL 103
            RY++T+  +RRAA  +R   +L
Sbjct: 1057 RYNETRNAARRAATQQRQAERL 1078


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 4   NNILLTHWLSICIQK*ANGKSLTVLDR 84
           N ILL  +L+I +   A+  SLT +++
Sbjct: 703 NYILLNVFLAIAVDNLADADSLTTVEK 729


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 341 VAQDSSYKYFEVILVDPSHKAIRR 270
           +A++    YF+ +  DPS + +R+
Sbjct: 366 IAEEYKVPYFDYVSSDPSFEEMRK 389


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/35 (22%), Positives = 15/35 (42%)
 Frame = +1

Query: 160 RVSMSLAETSGAATSRSQTTHLAMLMYSIHDPLIL 264
           R    L +           THL M +  ++DP+++
Sbjct: 603 RFVKELYDVRSGCVQEQDGTHLLMNLIKVNDPVVM 637


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,109
Number of Sequences: 2352
Number of extensions: 6339
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)