Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0156.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   3.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.2  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 213 LTSAGRSSRGLGKG 172
           +T  G+  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 246 NAVHKHREMRGLTSAGRSSRGLGKGHR 166
           N+  K+RE     S  R  RG  + HR
Sbjct: 287 NSYRKYRETSKERSRDRRERGRSREHR 313


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = -1

Query: 360 CVELLLG----CTRFFIQVFRGYP 301
           C+ LL+G    C +F + + +G+P
Sbjct: 284 CMMLLIGHWSGCLQFLVPMLQGFP 307


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = -1

Query: 360 CVELLLG----CTRFFIQVFRGYP 301
           C+ LL+G    C +F + + +G+P
Sbjct: 252 CMMLLIGHWSGCLQFLVPMLQGFP 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,036
Number of Sequences: 438
Number of extensions: 1908
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)