Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0153.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 1.0
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 29 1.8
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578... 28 2.4
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 28 2.4
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 4.1
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629... 27 4.1
05_03_0383 - 13352924-13353045,13353166-13353177,13353844-133539... 27 4.1
12_02_1279 + 27510605-27513301 27 5.5
10_08_1047 - 22549376-22551271 27 7.2
09_06_0354 - 22490833-22491417 27 7.2
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 26 9.5
>06_03_1490 + 30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.5 bits (63), Expect = 1.0
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 14 DTVP-TVVMEVYHPPAVPVTLMQAQTLQD--PVHPAVAALMDTVPTVVMEVYHPPAVPVT 184
D+VP T + + +VP T MQ P P +L D+VP+ M+ +VP T
Sbjct: 933 DSVPGTPLQKSVFDYSVPSTPMQKSVFDYSVPSTPLQKSLFDSVPSTPMQKSVFDSVPST 992
Query: 185 LMQAQTWQD-PVHPAVAALMDTVP 253
MQ + P P +L D+ P
Sbjct: 993 PMQNSLFDSFPSTPMQRSLFDSGP 1016
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 53 PAVPVTLMQAQTLQD-PVHPAVAALMDTVPTVVME--VYHPPA 172
P+ + TL+D P+ P+ AA DT+P + +HPPA
Sbjct: 22 PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64
>07_01_0752 -
5783305-5783416,5783739-5783836,5784550-5784675,
5784890-5785090,5785185-5785268,5785519-5785566,
5785709-5785763,5786130-5786185,5786281-5786365,
5786485-5786558,5787093-5787159,5788134-5788216
Length = 362
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 232 CYRRMYWIL-PGLCLHQCYWNCRWMIHFHHDCRNCIHK 122
CY+ +Y +L PG QC+ W I H++ N HK
Sbjct: 187 CYKEIYRVLKPG----QCFAVYEWCITDHYEPNNATHK 220
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +2
Query: 23 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 202
P +V EV+ + L QA Q + A L DTVP + + ++ AQT
Sbjct: 58 PALVQEVFMGNVLSANLGQAPARQAALG---AGLPDTVPCTTVNKVCSSGMKAVMLAAQT 114
Query: 203 WQDPVHPAVAA 235
Q +H V A
Sbjct: 115 IQLGMHDVVVA 125
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 330 YWILQGLCLHQCYWNCRXMIHFHHHIGTVSISAA 229
YW+L + +C W + H H+ TV AA
Sbjct: 309 YWVLASNLVLRCTWTYKLSAHLRHNYLTVFTIAA 342
>05_03_0384 -
13361999-13362120,13362241-13362252,13362921-13362981,
13363049-13363202,13364653-13364788,13365020-13365290,
13365654-13365962
Length = 354
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 146 VMEVYHPPAVPVTLMQAQTWQDPVH 220
+ E++HP + L+ A W DP+H
Sbjct: 241 ITELHHPIKKVMNLVTASKWSDPLH 265
>05_03_0383 -
13352924-13353045,13353166-13353177,13353844-13353904,
13353972-13354125,13355576-13355711,13355943-13356138
Length = 226
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 146 VMEVYHPPAVPVTLMQAQTWQDPVH 220
+ E++HP + L+ A W DP+H
Sbjct: 113 ITELHHPIKKVMNLVTASKWSDPLH 137
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 340 PPDVLDPARSVLASVLLELPVXD 272
P D L PA+ +LA VLL PV D
Sbjct: 167 PTDTLLPAQPLLAGVLLTSPVSD 189
>10_08_1047 - 22549376-22551271
Length = 631
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 98 PVHPAVAALMDTVPTVV--MEVYHPPAVPVT--LMQAQTWQDPVHPAVAALMDTVPMW 259
P +A+ + T P ++ + P P T L+ W+ ++P V L D +P+W
Sbjct: 80 PAAARLASRLRTAPAILHQLRALGCPIRPHTFLLLLRLYWRGGIYPLVLQLFDQMPLW 137
>09_06_0354 - 22490833-22491417
Length = 194
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 65 VTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPAVAA 235
V + T + + P V +D T PP VP+ Q+Q QDP P AA
Sbjct: 28 VVQLTTTTAELELEPTVTVQVDDNKTGAAADETPPVVPL---QSQETQDPNEPKAAA 81
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 47 HPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 202
H P P+ L+ + ++ P+ + +L V+++YH V L A T
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMT 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,524
Number of Sequences: 37544
Number of extensions: 214004
Number of successful extensions: 667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -