Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0153.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    32   0.17 
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    32   0.17 
U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical pr...    31   0.30 
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    31   0.40 
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    29   0.93 
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U70854-7|AAO91722.1|  106|Caenorhabditis elegans Galectin protei...    27   3.7  
U70854-6|AAK68382.1|  232|Caenorhabditis elegans Galectin protei...    27   3.7  
AB038502-1|BAB11967.1|  232|Caenorhabditis elegans galectin LEC-...    27   3.7  
U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase...    27   6.5  
AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinas...    27   6.5  

>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 98  PVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTWQDPV 217
           P+HP +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 98  PVHPAVAALMDTVPTVVMEVYHP-PAVPVTLMQAQTWQDPV 217
           P+HP +AA+  T    +M V HP P +P+    +Q+ Q P+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U00066-7|AAY86272.1|   80|Caenorhabditis elegans Hypothetical
           protein R12B2.8 protein.
          Length = 80

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 283 PVXDTLPSPHRNCIHKCCYRRMYWILP 203
           P  DT  S    C ++CCYR  YW+ P
Sbjct: 33  PELDTFFSFGTCCDNECCYRLRYWVYP 59



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 133 CIHKCCYRRMYWI 95
           C ++CCYR  YW+
Sbjct: 45  CDNECCYRLRYWV 57


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 20/79 (25%), Positives = 24/79 (30%)
 Frame = +2

Query: 17  TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQA 196
           T PT +      P  P T+    T   P  P       T PT +      P  P T+   
Sbjct: 251 TTPTTMKSTPTTPTTPTTMKSTPTT--PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKST 308

Query: 197 QTWQDPVHPAVAALMDTVP 253
            T   P  P       T P
Sbjct: 309 PT--TPTTPTTMKSTPTTP 325



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +2

Query: 17  TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQA 196
           T PT +      P  P T+    T   P  P       T PT +      P  P T+   
Sbjct: 365 TTPTTMKSTPTTPTTPTTMKSTPTT--PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKST 422

Query: 197 QT 202
            T
Sbjct: 423 PT 424


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 196 CLHQCYWNCRWMIHFHHDCRNC 131
           C   C+W CR  +  HH C NC
Sbjct: 58  CFIVCFW-CRCFMDVHHRCPNC 78



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 82  CLHQCYWNCRWMIHFHHDCWNC 17
           C   C+W CR  +  HH C NC
Sbjct: 58  CFIVCFW-CRCFMDVHHRCPNC 78


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
 Frame = +2

Query: 23  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 202
           PT V     P  VP T            P     + T PT    +  P   PV    + T
Sbjct: 481 PTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTT 540

Query: 203 WQD-PVHPAVAALMDTVP 253
               PV+P       TVP
Sbjct: 541 APTAPVNPTSPTTAPTVP 558


>U70854-7|AAO91722.1|  106|Caenorhabditis elegans Galectin protein
           11, isoform b protein.
          Length = 106

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 23  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 175
           P   M V  P  VPV     Q +  P++P+V  ++   PT    +Y  P V
Sbjct: 44  PPPPMIVPQPQIVPVVQQIMQPMVQPIYPSVQPIV--YPTATPIIYTQPEV 92


>U70854-6|AAK68382.1|  232|Caenorhabditis elegans Galectin protein
           11, isoform a protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 23  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 175
           P   M V  P  VPV     Q +  P++P+V  ++   PT    +Y  P V
Sbjct: 170 PPPPMIVPQPQIVPVVQQIMQPMVQPIYPSVQPIV--YPTATPIIYTQPEV 218


>AB038502-1|BAB11967.1|  232|Caenorhabditis elegans galectin LEC-11
           protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 23  PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAV 175
           P   M V  P  VPV     Q +  P++P+V  ++   PT    +Y  P V
Sbjct: 170 PPPPMIVPQPQIVPVVQQIMQPMVQPIYPSVQPIV--YPTATPIIYTQPEV 218


>U37429-16|AAA79341.1|  597|Caenorhabditis elegans Protein kinase c
           protein 3 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 145 DCRNCIHKCCYRRM 104
           DCR C+HK C+R +
Sbjct: 160 DCRLCVHKKCHRHV 173


>AF025666-1|AAB88885.1|  597|Caenorhabditis elegans protein kinase
           C3 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 145 DCRNCIHKCCYRRM 104
           DCR C+HK C+R +
Sbjct: 160 DCRLCVHKKCHRHV 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,466,057
Number of Sequences: 27780
Number of extensions: 178426
Number of successful extensions: 482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)