Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0153.Seq
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 40 6e-04
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 32 0.12
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.37
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 30 0.65
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 0.86
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 29 1.5
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 1.5
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 1.5
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 2.6
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 28 2.6
At1g31990.1 68414.m03934 expressed protein 28 2.6
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 3.5
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 27 3.5
At1g69280.1 68414.m07943 expressed protein 27 4.6
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 27 6.1
At5g57340.2 68418.m07162 expressed protein 26 8.0
At5g57340.1 68418.m07163 expressed protein 26 8.0
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 26 8.0
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom... 26 8.0
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 39.9 bits (89), Expect = 6e-04
Identities = 28/86 (32%), Positives = 34/86 (39%)
Frame = +2
Query: 23 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 202
P V Y PP PV + T PV P T P V Y+PP PV A
Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPVKPPTAPP 201
Query: 203 WQDPVHPAVAALMDTVPMW*WKCIXH 280
+ P P V +D VP+ +C H
Sbjct: 202 VKPPTPPPVRTRIDCVPLCGTRCGQH 227
Score = 31.5 bits (68), Expect = 0.21
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 17 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVP 139
T P V Y+PP PV A ++ P P V +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 44 YHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTV-VMEVYHPPAVPVT 184
Y PP +P T ++ T + PV P + P V + PP P T
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 32.3 bits (70), Expect = 0.12
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 23 PTVVMEVYHPPAVPVTLMQAQTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVPVTLMQAQ 199
PT+ VY PP TL PVH P ++ + T PT+ Y PP + A
Sbjct: 40 PTLPPPVYTPPVHKPTL-PPPVYTPPVHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAP 98
Query: 200 TWQDPVH-PAVAALMDTVP 253
+ PV+ P ++ + T P
Sbjct: 99 VYTPPVYKPTLSPPVYTKP 117
Score = 26.2 bits (55), Expect = 8.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +2
Query: 23 PTVVMEVYHPPAVPVTLMQA----QTLQDPVH-PAVAALMDTVPTVVMEVYHPPAVP 178
PT+ VY PP TL TL PV P ++ + T PT+ VY P P
Sbjct: 93 PTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTVYKPTLSP 149
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 30.7 bits (66), Expect = 0.37
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 41 VYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVH 220
+Y PP P + + T P++P T PT +Y P P+ T+ P++
Sbjct: 62 IYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPP---PIQKPPTPTYSPPIY 117
Query: 221 P 223
P
Sbjct: 118 P 118
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 29.9 bits (64), Expect = 0.65
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +2
Query: 23 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLMQA 196
P V VY P PV ++ PV+P A + T P V VY P PV
Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTK 177
Query: 197 QTWQDPVHP 223
+ PV P
Sbjct: 178 PPVKPPVSP 186
Score = 27.5 bits (58), Expect = 3.5
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = +2
Query: 17 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALM--DTVPTVVMEVYHPPAVPVTLM 190
T P V VY P PV ++ PV+P A + T P V V P PV
Sbjct: 136 TKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPP 195
Query: 191 QAQTWQDPVHPAVA 232
+ PV P V+
Sbjct: 196 VYPPTKAPVKPPVS 209
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.5 bits (63), Expect = 0.86
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 50 PPAVPVT-LMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 226
P A PVT A P AA T T + PPA PVT A T P P
Sbjct: 27 PAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPK 86
Query: 227 VAALM 241
VA ++
Sbjct: 87 VAPVI 91
Score = 28.3 bits (60), Expect = 2.0
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +2
Query: 2 AALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPV 181
AA T T + PPA PVT A T P P VA ++ PPA
Sbjct: 50 AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAP 109
Query: 182 TL 187
T+
Sbjct: 110 TV 111
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 157 HFHHDCRNCIHKCCYRRMYW 98
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 5 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 94
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 497 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 526
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 5 ALMDTVPTVVMEVYHPPAVPVTLMQAQTLQ 94
A+ +T VV +YHP P+ L ++QTLQ
Sbjct: 494 AVGETHLLVVGSLYHPAYAPIVLKKSQTLQ 523
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +2
Query: 17 TVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQA 196
+VP+ V PP P + + T PV P +VP+ V PP P + +
Sbjct: 107 SVPSPTPPVSPPPPTPTPSVPSPT--PPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 164
Query: 197 QTWQDPVHP 223
T P P
Sbjct: 165 PTPPVPTDP 173
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -3
Query: 193 LHQCYWNCRWMIHFHHDCRNCIHKCCYRRMYWIL*GLCLHQCYWNCRWMIHFHHDCWNCI 14
LH C +CR ++ ++C C HKC G C C ++ + C C
Sbjct: 102 LHCCKKHCRNVLGDRNNCGRCGHKC----------GFGQRCCGGVCTYVNFNPNHCGKCT 151
Query: 13 HKC 5
KC
Sbjct: 152 RKC 154
>At1g31990.1 68414.m03934 expressed protein
Length = 325
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 309 CLHQCYWNCRXMIHF-HHHIGTVSISAATAG 220
CL Q Y+ + H HHHI VSIS + G
Sbjct: 22 CLSQIYFPDSLLSHSTHHHINLVSISQSHVG 52
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 14 DTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHP 166
D+ +VV EV +P +++ V+P V+ D+ TVV +V +P
Sbjct: 17 DSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLNP 67
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/59 (27%), Positives = 21/59 (35%)
Frame = +2
Query: 50 PPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTWQDPVHPA 226
PP PV Q P P + P VY+PP P + + PV P+
Sbjct: 598 PPPSPVYYPQVTPSPPPPSPLYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPPVTPS 656
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Frame = -3
Query: 82 CLHQCYW-------NCRWMIHFHHDCWNCIHKCC 2
C C W +C W+ H CW+C CC
Sbjct: 335 CFSWCRWPSCDYNSSCGWLFCCHWSCWSCC--CC 366
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 26.6 bits (56), Expect = 6.1
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Frame = +2
Query: 17 TVPTVVMEVYHPPAVPVT----LMQAQTLQDPVH------PAVAALMDTVPTVVMEVYHP 166
T PT+ VY PP T + T+ PV+ P ++ + T PT+ VY P
Sbjct: 62 TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTP 121
Query: 167 PAV-PVTLMQAQTWQDPVH 220
P P + T PV+
Sbjct: 122 PVYKPTPVYTKPTIPPPVY 140
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = +2
Query: 23 PTVVMEVYHPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQT 202
PT+ VY P +P + + P V T PT+ VY PP TL
Sbjct: 54 PTLSPPVYTKPTIPPPVYTPPVYKHTPSPPVY----TKPTIPPPVYTPPVYKPTLSPPVY 109
Query: 203 WQDPVHPAV 229
+ + P V
Sbjct: 110 TKPTIPPPV 118
>At5g57340.2 68418.m07162 expressed protein
Length = 256
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -1
Query: 381 PITTVGTVSISAANRRMYWILQGLCLHQ 298
P+++ T S+ +R +W+ QGL +++
Sbjct: 226 PMSSSSTTSLDREKKRPHWLFQGLSINR 253
>At5g57340.1 68418.m07163 expressed protein
Length = 238
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -1
Query: 381 PITTVGTVSISAANRRMYWILQGLCLHQ 298
P+++ T S+ +R +W+ QGL +++
Sbjct: 208 PMSSSSTTSLDREKKRPHWLFQGLSINR 235
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 217 YWILPGLCLHQCYWNCRWM 161
+W+LP L LH+ + N W+
Sbjct: 2015 HWLLPALLLHEDHTNLDWV 2033
>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain; non-consensus TG acceptor splice site at
exon boundary 79262
Length = 880
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -1
Query: 267 FHHHIGTVSISAATAGCTGSCQVCACISVTG 175
++ H+ T I C G+C C C+ +G
Sbjct: 223 WYPHLSTDDILEKCPFCRGTCNCCTCLHSSG 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,848,032
Number of Sequences: 28952
Number of extensions: 154650
Number of successful extensions: 403
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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