Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0152.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   2.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    22   2.6  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    22   2.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    20   7.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    20   7.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    20   7.8  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 172 LNLLFSECNPVRSQWAK 122
           +NL+F+ C  V S W +
Sbjct: 64  VNLIFNTCGEVFSAWVR 80


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 178 SWLNLLFSECNPVRSQWAKSDKCSCSQKRMLKMQ 77
           +W  L F++  PV   WA          +M+K Q
Sbjct: 275 AWWYLPFAQFGPVIDSWATQPVLPTHPYQMIKNQ 308


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 178 SWLNLLFSECNPVRSQWAKSDKCSCSQKRMLKMQ 77
           +W  L F++  PV   WA          +M+K Q
Sbjct: 275 AWWYLPFAQFGPVIDSWATQPVLPTHPYQMIKNQ 308


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 64  SKKGIAFSTCVSVNNCICHF 123
           S+KG      +S+N CIC +
Sbjct: 33  SQKGQKTCLNLSINYCICGY 52


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 136 SEPDYILKKGDLAKIDLGAHIDGFIAVVAHT 228
           SE D+++    LA + +G  +  F+A++  T
Sbjct: 635 SEADFVMDVVMLAVLIVGFRLVAFLALLVKT 665


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 136 SEPDYILKKGDLAKIDLGAHIDGFIAVVAHT 228
           SE D+++    LA + +G  +  F+A++  T
Sbjct: 635 SEADFVMDVVMLAVLIVGFRLVAFLALLVKT 665


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,956
Number of Sequences: 336
Number of extensions: 1612
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)