Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0152.Seq
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 82 3e-17
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 64 1e-11
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 57 9e-10
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 35 0.005
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.27
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 28 0.61
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.5
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 3.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 24 7.6
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 24 7.6
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 7.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 10.0
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 10.0
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 82.2 bits (194), Expect = 3e-17
Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPD--YILKKGDLA 174
C GD+L+ E KV++ KD+ KGIAF T VS N+ H SP+ S+P+ LK GD+
Sbjct: 53 CVRGDELLNEAIKKVYRT-KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVV 111
Query: 175 KIDLGAHIDGFIAVVAHTVVVGESEVS 255
KI LGAHIDGF ++VA T VV E V+
Sbjct: 112 KILLGAHIDGFASLVATTTVVSEEPVT 138
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 63.7 bits (148), Expect = 1e-11
Identities = 30/83 (36%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Frame = +1
Query: 7 FGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGD 168
+GD L+ E + ++K ++ +KGIA T + VNNC +++P ++ Y L+ GD
Sbjct: 51 YGDNLLHEYKSSIYKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGD 109
Query: 169 LAKIDLGAHIDGFIAVVAHTVVV 237
+ KI +G H DG+ A+++HT+VV
Sbjct: 110 VTKISMGLHFDGYTALISHTIVV 132
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 57.2 bits (132), Expect = 9e-10
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +1
Query: 25 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 204
+E T + +E K GI F T VS+N+C H++P A + ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206
Query: 205 FIAVVAHTV 231
I A T+
Sbjct: 207 RIVDSAFTM 215
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 34.7 bits (76), Expect = 0.005
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 85 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 243
S C SVN ICH P P L+ GD+ ID+ + +GF + T VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.1 bits (62), Expect = 0.27
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -3
Query: 169 NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 80
+L+ S+C V+ QW+ ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 27.9 bits (59), Expect = 0.61
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -1
Query: 300 LH*HDELPTKHLQHVRDFTFTHNYCMSYNSYKSINVSTKIYLG*ISFF---QNVIRFA 136
LH E PT LQHV+D TF + + + + ++ + + + F Q V+ FA
Sbjct: 346 LHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFA 403
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 2.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 231 YCMSYNSYKSINVSTKIYLG*ISF 160
YC +YKS+ + T +Y+G F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 139 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 234
EP+Y+L G+L+ +L ID F T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 24.2 bits (50), Expect = 7.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 7 FGDKLVLEETNKVFKKEKD 63
FG+KL E T K+ EKD
Sbjct: 873 FGNKLAKEHTEKISSLEKD 891
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 237 HNYCMSYNSYKSINVSTKI 181
HN ++YN Y+ +NV T +
Sbjct: 36 HNLVVNYNLYEKLNVITPV 54
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 107 LFTETHVENAMPFLESFSFLKTLLVSSNTS 18
L+ T +EN F+E + TL+ SSN +
Sbjct: 678 LYLSTFLENNKSFIEGLNSPNTLIGSSNVA 707
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 1 CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIAS 138
C++ ++ TN+V E S+ G F ++ I H + +AS
Sbjct: 1602 CDYNFSVIASSTNEVTISELTSESGCLFFHFEKDDSGIDHVTAVAS 1647
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 4 EFGDKLVLEETNKVFKKEKDSKKG 75
E GD V E NK +K+K+ KKG
Sbjct: 203 ETGDATVEELQNKGKEKQKELKKG 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,220
Number of Sequences: 5004
Number of extensions: 27245
Number of successful extensions: 101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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