Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0152.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 47 5e-06
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 45 3e-05
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 43 8e-05
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 42 1e-04
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 42 2e-04
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 41 3e-04
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 39 0.001
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 27 5.5
01_06_1435 + 37351653-37351990,37352241-37352424 27 5.5
12_02_0224 - 15874958-15875311 27 7.2
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 27 7.2
04_04_0288 + 24164671-24165549,24166113-24166496 27 7.2
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 27 7.2
02_01_0429 - 3132848-3135043 27 7.2
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 7.2
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 27 7.2
01_01_0356 - 2814175-2815401 27 7.2
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 26 9.5
06_01_0619 - 4501296-4501561,4501664-4501784,4501915-4502253,450... 26 9.5
03_04_0230 - 19024413-19024574,19024916-19024995,19025200-19025509 26 9.5
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +1
Query: 25 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 204
LE + KE + GIAF T S+N H++P + + +L+ D+ K+D G HIDG
Sbjct: 274 LENMVRKLIKENGLQAGIAFPTGCSLNWVAAHWTPNSGDKT-VLQYDDVMKLDFGTHIDG 332
Query: 205 FIAVVAHTV 231
+I A TV
Sbjct: 333 YIVDCAFTV 341
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 44.8 bits (101), Expect = 3e-05
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +1
Query: 25 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 204
LE + KE + GIAF T S+N H++P + +L+ D+ K+D G HI+G
Sbjct: 218 LENMVRKLIKENGLEAGIAFPTGCSLNCVAAHWTPNGGDKT-VLQYDDVMKLDFGTHING 276
Query: 205 FIAVVAHTV 231
+I A TV
Sbjct: 277 YIVDSAFTV 285
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 73 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEV 252
G S C SVN CICH P +L+ GD+ ID+ +++G+ + T + GE +
Sbjct: 465 GFPKSVCTSVNECICHGIP----DSRVLQNGDIINIDVTVYLNGYHGDTSRTYLCGEVDE 520
Query: 253 S 255
S
Sbjct: 521 S 521
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 73 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 243
G S C SVN CICH P + E L+ GD+ ID+ +++G+ + T + GE
Sbjct: 195 GFPKSVCTSVNECICHGIPDSRE----LQDGDIINIDVTVYLNGYHGDTSKTFLCGE 247
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +1
Query: 73 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEV 252
G S C S+N C+CH P +++ L+ GD+ +D+ ++G+ + T V G EV
Sbjct: 154 GFPKSICTSLNECVCHGVPDSTQ----LQTGDIMNVDVNVFLNGYHGGASRTFVCG--EV 207
Query: 253 SDVLQMF 273
D ++ F
Sbjct: 208 DDSIRHF 214
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVS 255
I +KGD + D+G HIDGFIAVVAHT V+ + V+
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVT 86
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 73 GIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG 240
G S C SVN CICH P S P L+ GD+ ID+ +++G+ + T + G
Sbjct: 161 GFPKSVCTSVNECICHGIP-DSRP---LEDGDIINIDVTVYLNGYHGDTSATFLCG 212
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 151 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESE 249
++ +LA DLG +DG +AV A V+ ++E
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAE 479
>01_06_1435 + 37351653-37351990,37352241-37352424
Length = 173
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 26 WRRLTRFSKRRKTPRK-ALHFQHAFL 100
WR ++RFS R +TP + A H Q F+
Sbjct: 127 WRNISRFSVRTRTPTQVASHAQKYFI 152
>12_02_0224 - 15874958-15875311
Length = 117
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Frame = -3
Query: 199 QCEHQDLSWLNLLFSECNPVRSQ----WAKSDKCSCSQKRMLKMQCLSWSLSP 53
Q ++LSW +C+ + + WA C C + + W L P
Sbjct: 24 QQREEELSWAKRTVGDCSCISGEEEASWANRTDCGCGRGEEEAQRWREWHLPP 76
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 55 EKDSKKGIAFSTCVS--VNNCICHFSPIASEPDYILKKGDLAKIDL 186
E + K F+ C VN+ C SPI + L GDLAK+ L
Sbjct: 74 EPPATKHSVFTRCSPKFVNDACCALSPIHRQAFAALGLGDLAKMTL 119
>04_04_0288 + 24164671-24165549,24166113-24166496
Length = 420
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 193 EHQDLSWLNLLFSECNPVRSQW 128
+H+ LS +NL F C+ V +W
Sbjct: 204 QHEQLSMINLEFCTCDTVELEW 225
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 88 TCVSV---NNCICHFSPIASEPDYILKKGDLAKIDLG 189
TC+ N+ + H+ A+ D L GD+A +D+G
Sbjct: 251 TCICATGENSSVLHYGHAAAPNDRTLNDGDMALMDMG 287
>02_01_0429 - 3132848-3135043
Length = 731
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 95 THVENAMPFLESFSFLKTLLVSSN 24
T++ A+ L+SFS LKTLL+ N
Sbjct: 412 TNITKALYILKSFSNLKTLLLGGN 435
>02_01_0425 -
3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 95 THVENAMPFLESFSFLKTLLVSSN 24
T++ A+ L+SFS LKTLL+ N
Sbjct: 835 TNITKALYILKSFSNLKTLLLGGN 858
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 95 THVENAMPFLESFSFLKTLLVSSN 24
T++ NA+ L S S L TLL+S+N
Sbjct: 411 TNITNALQILRSSSKLTTLLISNN 434
>01_01_0356 - 2814175-2815401
Length = 408
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 159 FQNVIRFARNGRKVTNAVVHRNA 91
F +++RF+ GR +AVVHR A
Sbjct: 203 FLDLLRFSLAGRSTPSAVVHRGA 225
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 168 ISFFQNVIRFARNGRKVTNAVVHRNAC*KCNAFLGVFLLFENL 40
+ FQ +++ VT + + NAC +CN+F LL E L
Sbjct: 624 LELFQKMVQQGVRPNVVTFSAI-LNACSRCNSFEDAALLLEQL 665
>06_01_0619 -
4501296-4501561,4501664-4501784,4501915-4502253,
4502290-4502327,4502673-4502757,4502840-4503093,
4503868-4503961
Length = 398
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +1
Query: 31 ETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFI 210
E+ ++ K SK ++++ S + F P ++ D +LK GD G+ ++ F+
Sbjct: 143 ESGQIIKSPL-SKIVVSYTASFSSILTVKRFQPSVTDLDQLLKNGDYVGYQEGSFVNSFL 201
>03_04_0230 - 19024413-19024574,19024916-19024995,19025200-19025509
Length = 183
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 112 CSCSQKRMLKMQCLSWSLSPF 50
CSC + R +K + + W L PF
Sbjct: 65 CSCLKIRGMKQETMRWKLFPF 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,628
Number of Sequences: 37544
Number of extensions: 161052
Number of successful extensions: 398
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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