Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0152.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              137   3e-33
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         57   6e-09
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   28   3.2  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    27   5.6  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        27   5.6  
SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)                    27   7.4  
SB_15048| Best HMM Match : IMS (HMM E-Value=0)                         27   7.4  
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             26   9.8  
SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  137 bits (332), Expect = 3e-33
 Identities = 60/87 (68%), Positives = 71/87 (81%)
 Frame = +1

Query: 1   CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKI 180
           CE GD L+LEET+KV+KKEK+ KKGIAF TC+SVNNC+CHFSP+ SEPD  L  GDL KI
Sbjct: 53  CEKGDALILEETDKVYKKEKELKKGIAFPTCISVNNCVCHFSPLLSEPDITLNDGDLVKI 112

Query: 181 DLGAHIDGFIAVVAHTVVVGESEVSDV 261
           D G HIDGFIAV+ HT+VVG S+ + V
Sbjct: 113 DFGVHIDGFIAVIGHTIVVGCSKENKV 139


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
 Frame = +1

Query: 1   CEFGDKLVLEETNKVFKKEKDSK--KGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLA 174
           C+ G+   ++ET + ++ E D K  KG+AF T  S+N+C  H++P A +   +L   D+ 
Sbjct: 83  CDVGE--AIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTPNAGDKT-VLSYDDVC 139

Query: 175 KIDLGAHIDGFIAVVAHTV 231
           KID G HI+G I   A TV
Sbjct: 140 KIDFGTHINGRIVDCAFTV 158



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +1

Query: 76  IAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 231
           +AF T  S+N+C  H++P A +   +L   D+ KID G HI+G I   A TV
Sbjct: 2   LAFPTGCSLNHCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 52


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 95  THVENAMPFLESFSFLKTLLVSSNTSLSP 9
           TH ++ + F E+F+FL++L ++  T   P
Sbjct: 147 THQDDILAFRENFAFLRSLYLTDGTDTPP 175


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 273 KHLQHVRDFTFTHNYCMSYNSYKSINVSTK 184
           +HLQHV D     NY    N  ++  + TK
Sbjct: 81  EHLQHVSDSQTVRNYTQHVNGSRTARIYTK 110


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 18   TCIGGD*QGFQKGERLQERHCIFNMRFCEQLHLSLFAHCERTGLHSEKRRFSQDR 182
            T I  D +  Q+ E   E   +  ++   QL   L A  ER G HS+  R  +DR
Sbjct: 2422 TTIQSDYKKLQERESELEIELLSALKRVSQLEHELQAEKERAGGHSDSNRALEDR 2476


>SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)
          Length = 403

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 5   NLAINLYWRRLTRFSK 52
           NLA+N++W R T+F++
Sbjct: 255 NLAVNIWWARFTQFNQ 270


>SB_15048| Best HMM Match : IMS (HMM E-Value=0)
          Length = 660

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 76  IAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVS 255
           +A   C+   N     +  A E DY+L    L KID  +H    +   + T ++ E E++
Sbjct: 539 LALDICLLNLNAFNSRTENAPENDYLLVLEQLIKIDNTSHKKFQLDTTSETKILSEKEIT 598


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 377 IFSTLFSEWLQXLHSSQYQASETKSRFTSMMSCQQN 270
           +F T + +    LHS QYQ S ++    ++++  QN
Sbjct: 515 VFPTAWMKGFPILHSVQYQQSWSRVTCVNLLAANQN 550


>SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 7   FGDKLVLE----ETNKVFKKEKDSKKGIAFSTCVSVN 105
           FG K+V+      TNK  K +KD+K+  A    V++N
Sbjct: 331 FGSKVVIRTDVFSTNKYCKTKKDAKQNAAMVAVVALN 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,889
Number of Sequences: 59808
Number of extensions: 193384
Number of successful extensions: 484
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)