Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0151.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   3.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   3.6  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   6.3  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   6.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.4  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 361 LESTSLRARRFSLSVSRSKFKIHSQPRNEDPLMAN 465
           L   +L  RR  L++ R     H  P N  PLMAN
Sbjct: 102 LSKRALHYRRKRLALKRPPPDSHDSPNNSIPLMAN 136


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 340 INWNIYKMI*YIPLRCLRKESKYSKLPVNE 251
           INWNI + +    ++ L  ESK+S+  + E
Sbjct: 311 INWNILESVVNDTIKLLESESKFSEATLPE 340


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 362 NITNGRFNKLEHLQNDLVHTIE 297
           N+T+G+FN  E+   +LV+ IE
Sbjct: 807 NLTSGKFNFAEYETGELVYVIE 828


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 275 ILEATCKRTILFLSVMNFHSRKSKLVMYSTYILYF 171
           +L A C   +L  +V N  S + K V+Y  ++  F
Sbjct: 136 VLSAVCHGPVLLANVKNPQSVEGKTVVYHKHVTAF 170


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 404 TEREKRRARRDVDSNITNGRFNKLEHLQNDLVHTIEMLKKRIEILEAT 261
           ++R+K  A R+  S+I+      L+   N+L+  + M  K  E+ + T
Sbjct: 156 SKRQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYT 203


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 230 MNFHSRKSKLVMYSTYILYF*CFN 159
           +NF  +K++L  +S +IL+  C+N
Sbjct: 464 LNFTEKKNELQSWSFFILFNICYN 487


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 368 DSNITNGRFNKLEHLQNDLVHTIEMLKKRIEILEAT 261
           D+NI NG+  KLE L  D+    ++  K +E  E T
Sbjct: 18  DNNIDNGKRKKLE-LGKDMEDVHDIASKEMEEHETT 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,339
Number of Sequences: 5004
Number of extensions: 35192
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)