Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0151.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0180 + 2034021-2034023,2034741-2035088                           29   2.7  
01_06_1841 + 40267902-40268485,40269290-40270421                       27   6.3  
10_08_0759 + 20376532-20376753,20376821-20377009,20377113-20377658     27   8.4  
09_04_0539 - 18416184-18416830,18417983-18419057                       27   8.4  

>04_01_0180 + 2034021-2034023,2034741-2035088
          Length = 116

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 401 EREKRRARRDVDSNITNGRFNKLEHLQNDLVHTIEMLKKRIEIL 270
           ERE   A +D    + NGR +KL     +L  TIE L+++++ L
Sbjct: 19  ERENADAHKDQVKGL-NGRISKLNDTIKELNDTIEALERQVQNL 61


>01_06_1841 + 40267902-40268485,40269290-40270421
          Length = 571

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 368 DSNITNGRFNKLEHLQNDLVHTIE-MLKKRIEILEATCKRTILFLSVMNF 222
           D N  N R + L+H+  DL+  +E ML K  E  E+   +    ++ ++F
Sbjct: 385 DRNKDNERMDSLDHIVQDLIICLESMLNKAPEAYESQGLQCFFLMNNLHF 434


>10_08_0759 + 20376532-20376753,20376821-20377009,20377113-20377658
          Length = 318

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 272 LEATCKRTILFLSVMNFHSRKSKLVMYSTY 183
           LEATCK+T+    ++ + +R S  VM   Y
Sbjct: 112 LEATCKQTVSCADILAYAARDSVRVMTGGY 141


>09_04_0539 - 18416184-18416830,18417983-18419057
          Length = 573

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = -3

Query: 338 KLEHLQNDLVHTIEMLKKRIEILEATCKRTILFLSVMNFHSRKSKLVMYSTYILYF*CFN 159
           KL H +N  +    ML++ +E LEA CK       ++   +R S+  ++ + + +   F 
Sbjct: 500 KLRHTENRAL----MLEEMVEKLEAQCKDLARTSEILKLQARASRASLFCS-VQFVLLFI 554

Query: 158 IRTTLLHKVFQNSSK 114
              T L +++ +SS+
Sbjct: 555 AVGTFLVRLWPSSSE 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,707,591
Number of Sequences: 37544
Number of extensions: 180681
Number of successful extensions: 354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)